Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_2079 |
Symbol | |
ID | 5747640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 2273980 |
End bp | 2275851 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641297161 |
Product | ABC transporter related |
Protein accession | YP_001563104 |
Protein GI | 160897522 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.304897 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGAT ACCTTCTTCC CCGTCAGTTG GCCAAGGCCA CGGCGATGCC GTCGGGAACG GAGACGGTGG GGGCTTTTGC ATCTGCCATC GCCGAGTCCT TCGACCGGGC TGCGCACCAG CTGCGCCGGG CTGGCTGGCT GTCGCTGCCC ATCAGCCTGC TGGGACTGCT GCCGTCCATC TTCCTGCTGC AGGTCTACAA CCGCGTCATT GCGCGTGGCG GCACCGCCAC CCTCACGGCC ATGGTGGCGG GCGTGCTGTT CTTCCTGGGC GTGGAATGGT GGCTGCGGCG CAGGCGCGCC CGCGCCCTGC GCGAAGCCGG CGCCATCATC GACCGCGACG TGTCCCAGGC GCTGATGCAC TCCATGCTGC GCCACCCGCT GGCCGCGCTG GAGCAGCGCT CCTCCAGCCA GTGGCTGCAG CTGTTCCGCG ACGTGAGCGC CATGCGCTCG GGCATGTCCG GGGGCCTGGC GACCTCGCTG CTGGACCTGC CCATGGCCCT GCTGGCCCTG GTCGTCATCG GCATCATTGC CTGGCCCGTG CTGCCGGTGA TCCTGGTGGC CATGCTCATC ATGTGCGCGC TGGCCTGGTG GTGGGCCGAC GAGGTGCGCA GCGGCCGCGT GGAGGAAATC GCCCAGGCCC GCATGCTGGA CCGGGGCACG GCCGAGATCT GCAATGCCCG CGCCACGCTC AAGGTGCTGG GCTACGACGC CGCCGCACGC CAGAACTGGC AAAGCGGCTA TGACCGCTGG CTGGCCGAGA GCTTTGGCAA GAACGGCGAG ATGGAGAACG CACGCGAGGC CAGCACCGTG CTGCTGACGC TGTTCTCCAT TGCCGTGATC ACCGTGGGCG CCATTGCCAT CAATGCGCAG TGGATGAGCA TCGGCAGCCT GATGGCCGTG AACCTGCTGT CGGGCAAGGC GCTGGGCCCC ATCTCGCAAC TGGCCAGCAA CTGGCGCTCG CTGGCCCATG CCAACGAGGC CGCACGCCGC CTGCAGGCGG TGCTGGAGGA ACCCGTCGAG GCCATGACCG ACACCGTGGA CCTGCCCCGG CCCCAGGGCC GGCTGCGCCT GGACCAGGCA AGCTTCCACT ACCCGGGCGG CCATGTGGCG CTGGAGCAGG CATCGCTGGA GATCGGCCCC GGCGGGCTGC ACGCCATCGT GGGGCGCAAC GGCGCCGGCA AGTCCACCCT GGCCAAGCTG CTGGCCGGCC TCTACCAGCC CACGCAGGGG CGCATCTTCA TCGATGAATA CGACATGGCC CAGTTCCCGC GCGCCGAACT GGGCCGCTGG ATAGGCTGCC TGGCCCAGCA GGTGTACTGG TTCAGCGGCC CCATCGTGGA CGGGCTGCGC ATGGTCAACC CCGATGCCGA CGACCACAAG ATCGTCACCG CCTGCCAGAT CTCGGGCGCG CACGGCTTCA TCAGCCGCCT GCCCCAGGGC TACCAGACCG TGCTGGGCGA AGGCGGCGCG GGCCTGTCGG CCGGCGAGCT GCGCAAGCTG GCCCTGGCCC AGCTGTTCCT GCGCAACCCC TCGGTACTGA TCCTGGACGA GCCCAGCAAC GACCTGGACT TCGAGAGCGA AACCGCGCTG CTGCAGACGC TGCGGCAGAT TGCGCTCAAG CACACGGTCA TCGTCGTCAC GCACTCGCTG CGCGTGGCCT CCATGGCCCA GCATCTCTAC CATGTGCGCG GCGACGGCGG CATCGAGCAT GGCTCGCCCC AGCTGCTGCT GCCCCAGCTG TTCGGCACGG CGCGCGAGCC TGCGGCTCCC GCAGCACCAG CAGCGTCCGC AACATCCGCA GCCCCCGCAA CGCCGGCCGA CACGGCCCCG CATGCCGATC ACCCCGCCGT GGCGCAGGAG CTTGCCTCAT GA
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Protein sequence | MIRYLLPRQL AKATAMPSGT ETVGAFASAI AESFDRAAHQ LRRAGWLSLP ISLLGLLPSI FLLQVYNRVI ARGGTATLTA MVAGVLFFLG VEWWLRRRRA RALREAGAII DRDVSQALMH SMLRHPLAAL EQRSSSQWLQ LFRDVSAMRS GMSGGLATSL LDLPMALLAL VVIGIIAWPV LPVILVAMLI MCALAWWWAD EVRSGRVEEI AQARMLDRGT AEICNARATL KVLGYDAAAR QNWQSGYDRW LAESFGKNGE MENAREASTV LLTLFSIAVI TVGAIAINAQ WMSIGSLMAV NLLSGKALGP ISQLASNWRS LAHANEAARR LQAVLEEPVE AMTDTVDLPR PQGRLRLDQA SFHYPGGHVA LEQASLEIGP GGLHAIVGRN GAGKSTLAKL LAGLYQPTQG RIFIDEYDMA QFPRAELGRW IGCLAQQVYW FSGPIVDGLR MVNPDADDHK IVTACQISGA HGFISRLPQG YQTVLGEGGA GLSAGELRKL ALAQLFLRNP SVLILDEPSN DLDFESETAL LQTLRQIALK HTVIVVTHSL RVASMAQHLY HVRGDGGIEH GSPQLLLPQL FGTAREPAAP AAPAASATSA APATPADTAP HADHPAVAQE LAS
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