Gene Daci_2079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2079 
Symbol 
ID5747640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2273980 
End bp2275851 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content70% 
IMG OID641297161 
ProductABC transporter related 
Protein accessionYP_001563104 
Protein GI160897522 
COG category[V] Defense mechanisms 
COG ID[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.304897 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGAT ACCTTCTTCC CCGTCAGTTG GCCAAGGCCA CGGCGATGCC GTCGGGAACG 
GAGACGGTGG GGGCTTTTGC ATCTGCCATC GCCGAGTCCT TCGACCGGGC TGCGCACCAG
CTGCGCCGGG CTGGCTGGCT GTCGCTGCCC ATCAGCCTGC TGGGACTGCT GCCGTCCATC
TTCCTGCTGC AGGTCTACAA CCGCGTCATT GCGCGTGGCG GCACCGCCAC CCTCACGGCC
ATGGTGGCGG GCGTGCTGTT CTTCCTGGGC GTGGAATGGT GGCTGCGGCG CAGGCGCGCC
CGCGCCCTGC GCGAAGCCGG CGCCATCATC GACCGCGACG TGTCCCAGGC GCTGATGCAC
TCCATGCTGC GCCACCCGCT GGCCGCGCTG GAGCAGCGCT CCTCCAGCCA GTGGCTGCAG
CTGTTCCGCG ACGTGAGCGC CATGCGCTCG GGCATGTCCG GGGGCCTGGC GACCTCGCTG
CTGGACCTGC CCATGGCCCT GCTGGCCCTG GTCGTCATCG GCATCATTGC CTGGCCCGTG
CTGCCGGTGA TCCTGGTGGC CATGCTCATC ATGTGCGCGC TGGCCTGGTG GTGGGCCGAC
GAGGTGCGCA GCGGCCGCGT GGAGGAAATC GCCCAGGCCC GCATGCTGGA CCGGGGCACG
GCCGAGATCT GCAATGCCCG CGCCACGCTC AAGGTGCTGG GCTACGACGC CGCCGCACGC
CAGAACTGGC AAAGCGGCTA TGACCGCTGG CTGGCCGAGA GCTTTGGCAA GAACGGCGAG
ATGGAGAACG CACGCGAGGC CAGCACCGTG CTGCTGACGC TGTTCTCCAT TGCCGTGATC
ACCGTGGGCG CCATTGCCAT CAATGCGCAG TGGATGAGCA TCGGCAGCCT GATGGCCGTG
AACCTGCTGT CGGGCAAGGC GCTGGGCCCC ATCTCGCAAC TGGCCAGCAA CTGGCGCTCG
CTGGCCCATG CCAACGAGGC CGCACGCCGC CTGCAGGCGG TGCTGGAGGA ACCCGTCGAG
GCCATGACCG ACACCGTGGA CCTGCCCCGG CCCCAGGGCC GGCTGCGCCT GGACCAGGCA
AGCTTCCACT ACCCGGGCGG CCATGTGGCG CTGGAGCAGG CATCGCTGGA GATCGGCCCC
GGCGGGCTGC ACGCCATCGT GGGGCGCAAC GGCGCCGGCA AGTCCACCCT GGCCAAGCTG
CTGGCCGGCC TCTACCAGCC CACGCAGGGG CGCATCTTCA TCGATGAATA CGACATGGCC
CAGTTCCCGC GCGCCGAACT GGGCCGCTGG ATAGGCTGCC TGGCCCAGCA GGTGTACTGG
TTCAGCGGCC CCATCGTGGA CGGGCTGCGC ATGGTCAACC CCGATGCCGA CGACCACAAG
ATCGTCACCG CCTGCCAGAT CTCGGGCGCG CACGGCTTCA TCAGCCGCCT GCCCCAGGGC
TACCAGACCG TGCTGGGCGA AGGCGGCGCG GGCCTGTCGG CCGGCGAGCT GCGCAAGCTG
GCCCTGGCCC AGCTGTTCCT GCGCAACCCC TCGGTACTGA TCCTGGACGA GCCCAGCAAC
GACCTGGACT TCGAGAGCGA AACCGCGCTG CTGCAGACGC TGCGGCAGAT TGCGCTCAAG
CACACGGTCA TCGTCGTCAC GCACTCGCTG CGCGTGGCCT CCATGGCCCA GCATCTCTAC
CATGTGCGCG GCGACGGCGG CATCGAGCAT GGCTCGCCCC AGCTGCTGCT GCCCCAGCTG
TTCGGCACGG CGCGCGAGCC TGCGGCTCCC GCAGCACCAG CAGCGTCCGC AACATCCGCA
GCCCCCGCAA CGCCGGCCGA CACGGCCCCG CATGCCGATC ACCCCGCCGT GGCGCAGGAG
CTTGCCTCAT GA
 
Protein sequence
MIRYLLPRQL AKATAMPSGT ETVGAFASAI AESFDRAAHQ LRRAGWLSLP ISLLGLLPSI 
FLLQVYNRVI ARGGTATLTA MVAGVLFFLG VEWWLRRRRA RALREAGAII DRDVSQALMH
SMLRHPLAAL EQRSSSQWLQ LFRDVSAMRS GMSGGLATSL LDLPMALLAL VVIGIIAWPV
LPVILVAMLI MCALAWWWAD EVRSGRVEEI AQARMLDRGT AEICNARATL KVLGYDAAAR
QNWQSGYDRW LAESFGKNGE MENAREASTV LLTLFSIAVI TVGAIAINAQ WMSIGSLMAV
NLLSGKALGP ISQLASNWRS LAHANEAARR LQAVLEEPVE AMTDTVDLPR PQGRLRLDQA
SFHYPGGHVA LEQASLEIGP GGLHAIVGRN GAGKSTLAKL LAGLYQPTQG RIFIDEYDMA
QFPRAELGRW IGCLAQQVYW FSGPIVDGLR MVNPDADDHK IVTACQISGA HGFISRLPQG
YQTVLGEGGA GLSAGELRKL ALAQLFLRNP SVLILDEPSN DLDFESETAL LQTLRQIALK
HTVIVVTHSL RVASMAQHLY HVRGDGGIEH GSPQLLLPQL FGTAREPAAP AAPAASATSA
APATPADTAP HADHPAVAQE LAS