Gene Daci_1228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1228 
Symbol 
ID5746783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1369028 
End bp1369744 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content71% 
IMG OID641296307 
ProductMgtC/SapB transporter 
Protein accessionYP_001562257 
Protein GI160896675 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCCC TGCAGAACCT CAACCCCGGC GCCATGCTGG ACACCTTCGT CAGCCTGACC 
ACGGCCTTCG TGTTCGGCGC CCTCATCGGC CTGGAGCGCC AGGTGCGCCA GCGCACGGCG
GGGCTGCGCA CCAACACCCT GGTCGCCGTG GGCGCGGCCG TCTTCGTGGA CCTGGCCGTG
CGCCTGGGCG GGGCCGAGGG CGCCACGCGC GTGGTGGCCT ACGTGGTCTC GGGCGTGGGC
TTCCTGGGCG CGGGCGCCAT CATGAAGGAA GGGGCCAACA TCACCGGGCT GAACACGGCG
GCCACGCTGT GGGGCTCGGC CGCCGTGGGC GCCTGCGCGG GCGCCAGCCT GGTGGCCGAG
GCCGGCCTGG CCACGCTCTT CGTGCTGGCT AGCAATACCT TGCTGCGCCC CGTGGTCAAC
CGCATCAACC GCCGCCCGGT GGATGACGAA TCCACGGAAT CGACCTACTA CGTCTACGCC
ATCTGCCACC GCGGCGCCCA GGGTGATGTG CGCGAGCAGA TGCTGGAGCT GCTGGAGAAC
GCCAGCTACC CCGTGCGCGG CGTGGAAACC CATGCCTTCG GCCCGCAGGA CACGGAGATC
GAGGCCATGC TCTACGCCAC CTCGGTGGAC TCCGACGAGC TGGACCGCGT GATCGCCGCC
ATCGAGGCCC TGCCCGGCGT GCTGCAGGCC TTCTGGAACG CCGGCACGGA GGAGTGA
 
Protein sequence
MQALQNLNPG AMLDTFVSLT TAFVFGALIG LERQVRQRTA GLRTNTLVAV GAAVFVDLAV 
RLGGAEGATR VVAYVVSGVG FLGAGAIMKE GANITGLNTA ATLWGSAAVG ACAGASLVAE
AGLATLFVLA SNTLLRPVVN RINRRPVDDE STESTYYVYA ICHRGAQGDV REQMLELLEN
ASYPVRGVET HAFGPQDTEI EAMLYATSVD SDELDRVIAA IEALPGVLQA FWNAGTEE