Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_1070 |
Symbol | |
ID | 5746625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 1180115 |
End bp | 1181398 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641296150 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001562100 |
Protein GI | 160896518 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.392938 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGATCC GCCGCCATTG CATCCGACGA TATTCCCAAC CATCCATCGT TCTCGCCACC GCCCTGCTGT GCGCCACGGC CGCCCACGCC CAGGGCGGCG AGACCTTCAA GATCGCCTTC ATCGATCCGC TGTCCGGCCC CTTCGTCAGC ACGGGCGAGC TGATGCGCGA CCACGTGCAA TACGCGGTCG AGGACGTGAA CGCCAAGGGC GGGCTGTTCA ACGGCGCGAA GCTGCAGCTG CTGCAGTTCG ACAGCAAGCT CTCGGCCCAG GAAAGCCAGG CCGCGTTGCA GGCGGCCATT GACCAGGGCG CGCGCGTGGT GGTGACGGGA GGTTCGGGCT CTTCGGTGGT GGCGGCGCTG GTGCAGGCGG CATCGCGTCA CAACCAGCGC AATCCGGGCA AGGAGGTGCT GGTGCTCAAC CACTCCTCCA TCGACCCCGA GCTGACGGGC AAGGCCTGCA GCTTCTGGCA CTTCATGTTC GATGCCAACA CCGCCATGCG CATGCAGGCG ATTGCCAGCT ATATCAAGAC CCAGCCCGGC ATCCGCAAGG TCTACCTGCT CAACCAGGAC TACGCCCACG GCAAGCAGTG GGCGGCCTAC GGGCGCCAGA TGGTGAGCGC GGCCCGGCCC GACATCCAGT TCACGGGCGA GATGCTCCAC CCCATAGGCC GGGTCAAGGA CTTCGCGCCC TATGTGGCCA AGATCAAGGA AACGGGTGCG GACTCGGTGA TCACGGGCAA CTGGGGCCAG GACCTGACCC TGCTGCTCAA GTCGGCCGCC GACTCGGGCT ATGACCTGCG CTACTTCAAC CACAGCGCGG GCGGCATGCC GGGCACGGTG ACATCCTTCG CCCAGACCCG CATCGGCCAG CTGACCTGGG TGGCCGAATG GCACCCGGGC CAGGCCGGCC GCCCGCTGGC CGACGCCCGC GCCCAGGAAT ACAAGGCCCG CATGGGCAAG GACTTCATGG CCCCGCGCAT GGACCTGGTG CCGCGCATGC TGGCCGCCGC CATGGCCAAG GCACAGTCCA CCGAACCCGT GAAGATCGCG CTGGCCATGG AGGATTTGCA GATGGACACC GTGGTCGGCC CTGTGCGCAT GCGCGGCAAG GACCACCAGC TGCTGCTGCC CCAGGTGGTC AACACCATCG CGCCCGTGGA CGGCAAGCTG GTCAAGGCCG GCTGGGAAGG CACGAACTAC GGCTTTCGCA CCGATGCCGT CTACACGCCC GAGCAGGTGG AATTGCCCAC GTACTGCCAG ATGAAGCGGC CTGGCGGGCG CTGA
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Protein sequence | MPIRRHCIRR YSQPSIVLAT ALLCATAAHA QGGETFKIAF IDPLSGPFVS TGELMRDHVQ YAVEDVNAKG GLFNGAKLQL LQFDSKLSAQ ESQAALQAAI DQGARVVVTG GSGSSVVAAL VQAASRHNQR NPGKEVLVLN HSSIDPELTG KACSFWHFMF DANTAMRMQA IASYIKTQPG IRKVYLLNQD YAHGKQWAAY GRQMVSAARP DIQFTGEMLH PIGRVKDFAP YVAKIKETGA DSVITGNWGQ DLTLLLKSAA DSGYDLRYFN HSAGGMPGTV TSFAQTRIGQ LTWVAEWHPG QAGRPLADAR AQEYKARMGK DFMAPRMDLV PRMLAAAMAK AQSTEPVKIA LAMEDLQMDT VVGPVRMRGK DHQLLLPQVV NTIAPVDGKL VKAGWEGTNY GFRTDAVYTP EQVELPTYCQ MKRPGGR
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