| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0819 |
|---|
| Symbol | |
|---|
| ID | 5746373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 912751 |
|---|
| End bp | 915864 |
|---|
| Gene Length | 3114 bp |
|---|
| Protein Length | 1037 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641295899 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_001561850 |
|---|
| Protein GI | 160896268 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.56673 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGTT CCCACACGAT TTCCGAAGAC GGCGGCCTGG ACCGGGCCGC CGACTCCCGC
TCCCAGCCCG ACGGCCGCTA CCTTGGCCTG GCGCTGGCGC AGTCACGCAT CGCCATCCGC
GGTGCGCGCA CGCACAACCT CAAGAACATC GACCTGGACA TTCCGCGCAA CCGCCTGGTG
GTGATCACCG GGCTGTCGGG CTCGGGCAAG TCCAGCCTGG CCTTCGACAC GCTGTATGCC
GAGGGCCAGC GCCGCTATGT GGAGAGCCTG TCGGCCTATG CGCGCCAGTT CCTGGGGCGG
CTGGACAAGC CCGATGTGGA CCTGATCGAG GGCCTGTCGC CCGCCATCAG CATCGAGCAG
AAGGCCACCA GCCACAACCC GCGCTCCACC GTGGGCACGG TGACCGAGAT CAACGACTAC
CTGCGCCTGC TGTTCGCACG CGCCGGCACG CCCTACTGCC CCGACCACAA CCTGCCGCTG
CAGTCCCAGA CCATCAGCCA GATGGTGGAT GCGGCCCTGG CCCTGCCCGA GGACACGCGC
CTCATGGTGC TGGGGCCGCT GGCGCGCAAC AAGAAGGGCG AGTTCGCCGA GCTGTTCGCG
CAGATGCAGG CCCAGGGCTA TGTGCGCTTT CGCATCGACG GCAAGATCCA CGAGTCCCAT
TCCCTGCCCA CGCTGGAGAA GAACGAGCGC CACGACATCG ACGTGGTGAT CGACCGCCTC
AAGGTGCGCG CCGACGCCCA GCAGCGCCTG GCCGAGAGCT TCGAGGCCGC CCTGCGCGCG
GGTGGCGCCG ACGCCGGCGG CCGCGTGATC GCCCTGGAGA TGGACAGCGG CAAGGAACAC
CTCTTCAGCG CCAAGTTCGC CTGCCCGCTG TGCAGCTATT CGCTGCCCGA GCTGGAGCCG
CGCCTGTTCT CGTTCAATTC GCCCATGGGC GCCTGCCCGG GCTGCGACGG CCTGGGCTGC
ACTGAGTCCT TCGACCCCGA GCGCGTGGTC GCCTTCCCTA CGCTGAGCCT GGCCAGCGGC
GCCGTCAAGG GCTGGGACCG GCGCAACGGC TACTACTTCT CCATGCTGGA GAGCGTGGCG
CGCCACTACG GCACCGATGT GGAACTGCCC TTCGAGGAGC TGCCCGAGAA GGTGCGCCAT
GTGGTGCTCT GGGGCTCGGG CGAGGAGGAA ATGCCCTTCA GCTACGTCTT CGACAGCGGC
GCGCGCAAGG GCGAGTCCAT GGTCAAGAGC CATCCCTTCG AGGGCATCAT TCCCAACATC
ACGCGGCGCT GGCGCGAGAC CGAGTCCAGC GTGGTGCGCG ACGATCTGGC GCGGCTGCGC
AGCGTCGCCG TCTGCCCCGA CTGCGGCGGC ACGCGGCTGC GCCGCGAGGC GCGCTTCGTG
CGCATTGGCG AGGGCGAGCA GGCCCGCGCC ATCTACGAAG TGGGCCACGC CACGCTGGCC
GAGGCCCATG CCTGGTGCGC GTCCCTGCAG CTGTCGGGCG CCAAGGCCGA GATCGCGGGC
AAGGTGGTGC GCGAGATCGC CTCGCGCCTG CTGTTCCTCA ACGACGTGGG CCTGAGCTAC
CTGAGCCTGG AGCGCGGCGC GGACACCCTG TCCGGCGGCG AGGCCCAGCG CATCCGCCTG
GCCAGCCAGA TCGGCAGCGG CCTGACGGGC GTGATGTATG TGCTGGACGA GCCCAGCATC
GGATTGCACC AGCGCGACAA CGACAAGCTC ATCGGCACGC TGCAGCACCT GCGCGACATC
GGCAACAGCG TCATCGTGGT CGAGCACGAC GAGGACATGA TGCGCGCGGC CGACCAGATC
ATCGACCTGG GGCCCGGCGC GGGCGTGCAT GGCGGCCGCG TCATGGCCCA GGGCAGCTAC
GAAGAGGTGC GCGCCAATCC CGATTCACCC ACGGGCCGCT ACCTGGCGGG CACCCAGCGC
ATTGAAGTGC CTGCGCGGCG CACGCCCTGG CAACCGGTGC TGGAGGCAAC GGCCGAGGGC
GAGGCCCGGC CAGCGGCCAA GGGCTTTCCG GCCCGTGCCC AGCAGCCCCC GGCCAATCCC
GACAACGCAA CCGCCCCCGG CGCGCCGCAA CTGCAGGCCC TGCGCGTCGT GGGCGCACGC
GGCCACAACC TCAAGGGCGT GACGGCGGAC TTTCCCGTGG GCCTGCTGAC CTGCGTGACC
GGCGTCTCGG GCTCGGGCAA GAGCACCCTG GTCAACGACA CGCTCTATAC CGAGGCCGCG
CGCCAGATCC ACCGTGCCGG CGGCGAGGCC GCGCCGCACG ACGACATCAT CGGCATGGGC
CATTTCGACA AGGTCATCAA TGTGGACCAG TCACCCATAG GCCGCACGCC GCGCAGCAAC
CCGGCCACCT ACACGGGCCT GTTCACGCCC ATCCGCGACC TGATGGCCGA GACCAACACC
GCCAAGGAGC GCGGCTACGG CCCCGGGCGC TTCTCGTTCA ACGTGGCCGG CGGCCGCTGC
GAGGCCTGCC AGGGCGACGG CGTGGTCAAG GTGGAGATGC ACTTCCTGCC CGATGTCTAC
GTGCCCTGCG ACATCTGCAA CGGCCAGCGC TACAACCGCG AGACGCTGGA GGTGCAGTGG
AAGGGCCGCA ACATCTCCCA GATCCTGGAG ATGACGGTGG AGGACGCCCA TGCCTTCTTC
AAGGACGTGC CCACCATCGC CCGCAAGCTG CAGACCCTGC TGGACGTGGG CCTGTCCTAT
ATCCGGCTGG GCCAGAGCGC GACCACGCTG TCGGGCGGCG AGGCGCAGCG CGTCAAGCTG
GCCCAGGAGC TGTCCAAGCG CGACACGGGG CGCACGCTCT ACATCCTGGA CGAGCCCACG
ACGGGCCTGC ACTTCGCCGA CATCGCCCTG CTGCTCAAGG TGCTGCAGCA GCTGCGCGAT
GCGGGCAACA CCATCGTGGT CATCGAGCAC AACCTGGACG TGATCAAGAC GGCCGACTGG
ATCATCGACA TGGGCCCCGA AGGCGGCTCG GGCGGCGGTC AGGTGGTGGC CACGGGCACG
CCCGAGGACG TGGCGGCCAA CCCGGCCAGC CATACGGGGC GCTATCTGCG GCCCTATCTG
GAGGCAGCGT CGGCTCCTGC GCAGGCCAAG CCAGGCCGCA AGAACGCAAA GTGA
|
|---|
| Protein sequence | MPGSHTISED GGLDRAADSR SQPDGRYLGL ALAQSRIAIR GARTHNLKNI DLDIPRNRLV
VITGLSGSGK SSLAFDTLYA EGQRRYVESL SAYARQFLGR LDKPDVDLIE GLSPAISIEQ
KATSHNPRST VGTVTEINDY LRLLFARAGT PYCPDHNLPL QSQTISQMVD AALALPEDTR
LMVLGPLARN KKGEFAELFA QMQAQGYVRF RIDGKIHESH SLPTLEKNER HDIDVVIDRL
KVRADAQQRL AESFEAALRA GGADAGGRVI ALEMDSGKEH LFSAKFACPL CSYSLPELEP
RLFSFNSPMG ACPGCDGLGC TESFDPERVV AFPTLSLASG AVKGWDRRNG YYFSMLESVA
RHYGTDVELP FEELPEKVRH VVLWGSGEEE MPFSYVFDSG ARKGESMVKS HPFEGIIPNI
TRRWRETESS VVRDDLARLR SVAVCPDCGG TRLRREARFV RIGEGEQARA IYEVGHATLA
EAHAWCASLQ LSGAKAEIAG KVVREIASRL LFLNDVGLSY LSLERGADTL SGGEAQRIRL
ASQIGSGLTG VMYVLDEPSI GLHQRDNDKL IGTLQHLRDI GNSVIVVEHD EDMMRAADQI
IDLGPGAGVH GGRVMAQGSY EEVRANPDSP TGRYLAGTQR IEVPARRTPW QPVLEATAEG
EARPAAKGFP ARAQQPPANP DNATAPGAPQ LQALRVVGAR GHNLKGVTAD FPVGLLTCVT
GVSGSGKSTL VNDTLYTEAA RQIHRAGGEA APHDDIIGMG HFDKVINVDQ SPIGRTPRSN
PATYTGLFTP IRDLMAETNT AKERGYGPGR FSFNVAGGRC EACQGDGVVK VEMHFLPDVY
VPCDICNGQR YNRETLEVQW KGRNISQILE MTVEDAHAFF KDVPTIARKL QTLLDVGLSY
IRLGQSATTL SGGEAQRVKL AQELSKRDTG RTLYILDEPT TGLHFADIAL LLKVLQQLRD
AGNTIVVIEH NLDVIKTADW IIDMGPEGGS GGGQVVATGT PEDVAANPAS HTGRYLRPYL
EAASAPAQAK PGRKNAK
|
|---|
| |