Gene Daci_0554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_0554 
Symbol 
ID5746097 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp607856 
End bp609973 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content67% 
IMG OID641295623 
ProductUvrD/REP helicase 
Protein accessionYP_001561585 
Protein GI160896003 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.358681 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCCCGC TTCCCTCACT TTCACGCCTT TCCCCGCGCA ACGCACCCAT GTCCGCAGGA 
CTCAATCTGG CCCAGCTCCA GGCCGTCCAC TACACCGAAG GCCCCTGCCT GGTCCTGGCC
GGCGCGGGCT CGGGCAAGAC ACGCGTGATC ACGCACAAGA TCGGGCGCCT GATCGAGATG
GGCATGGCGC CGCGCCGCAT CGCGGCCATC ACCTTCACCA ACAAGGCCGC GGCCGAAATG
CGCGAGCGCG CGGCCGGCCT CATCGGCCGC CAGGCCAAGG ACGTGCTGGT GTGCACCTTC
CACGCCCTGG GTGTGCGCAT GGTGCGCGAG GACGGCCATG TGCTGGGCCT CAAGCCCCAG
TTCAGCATCC TGGACGCCGA CGACGTGACG GGCATCCTCA AGGACTGCTC GGGCGGCACC
ACCGACCTGG CCACGGCGCG CCAGTGGCAG TGGACCATCA GCAACTGGAA GAACGCCGGC
TGGGACAGCC GCAAGGCCCT GGCCATGGCC CAGGACGACA ACGAGCGCAG CACGGCCCTG
ATCATGCAGC GCTACGAAGA GCGCCTGACC GCCTACCAGA GCGTGGATTT CGACGACCTG
ATCGGCATGC CCATGCGCCT GCTCAAGAAC CACATCGAAG TGCGCGAGAA ATGGCAGCGC
CTGCTGGGCC ATGTGCTGGT GGACGAATAC CAGGACACCA ACGCCACGCA GTACGAGCTG
CTCAAGATGC TGGTGGGCAG CCGCGCCCAC TTCACCGCCG TGGGCGACGA CGACCAGAGC
ATCTACGGCT GGCGCGGCGC CACGCTGGAC AACCTCAAGA AGCTGCCGGT GGAGTTCCCG
CAGCTCAAGG TGATCAAGCT GGAGCAGAAC TACCGCTCCA CCTCGGCCAT CCTGCGCGCG
GCCAACAACG TCATCCAGCC CAACCCCAAG CTCTATCCGA AGACGCTGTT CTCGGAGCTG
GGCGAGGGCG AGCCTGTGCG CATCGTGGAC TGCGACACCG AGGAGCACGA GGCCGAGCGC
GCCGTCGCCC GCATCCAGAG CCTGCGAGCG GCCAGCAACC CGCCGCCGGA CTGGAAGGAT
TTCGCCATCC TCTACCGTGC CAACCACCAG GCCAAGCCCT TCGAGAAGGC CTTGCGCAAG
GCCAGCATTC CCTACAAGGT CTCGGGCGGC ACCAGCTTCT TCGACCGCGC CGAGATCAAG
GACCTGTGCG CCTGGTTCCG GCTGTGGATC AACAACGACG ACGACCCCGC CTTCCTTCGC
GCCATCGGCA CGCCCAGGCG CGGCATAGGC CACACCACGC TGGGCAAGCT GGGCGAGTTT
TCCTCGCAGC ACAAGCTCAG CATGTTCGGC GCCCTGTTCG CGCACATGCT GGAAGCGGCC
CTGCCCAAGA AGGCGCATGA CAGCCTGTTG GAGTTCGGCC GCTACATCAA CGACCTCGAA
TACCGCGCCC GCCACACGCT GGGCGCCGAG CAGTCGCGCG GCTTCATGCT CGACTGGCTC
AAGGAGATCG GCTACGAGCA GTACCTCTAC GACAGCGAGG ACAGCGAATC GGTCGCCGCC
GCGCGCTGGA GCAACGTGCT GGAGTTCTGC GACTGGATGG CCCAGCGCGC CGGCGGCCAG
ATCGAGGATG CGGCGGGCAC GACCACGCAC ACCGAGGTCA AGAGCCTGCT GGAAGTGGCG
CGCAACATCG CCCTGCTGTC CACCATCAGC GAGCGCGAGA AGGAGCAGGA CATGGTCATC
CTGTCCACCC TGCACGCCTC CAAGGGCCTG GAATGGCCGC ATGTGATGCT GGTGGGCGTG
ACCGAGGGCA TGCTGCCCTT CAAGCTCGAC GACGACAACG GCCGCCAGCA GAAGGTCAGC
GACGAAACCG CCCAGCGCCT GCAGGAAGAG CGCCGCCTCA TGTACGTGGG CATCACGCGC
GCCCGCCGCT CTCTGGCCGT GAGCTGGACC AAGCGCCGCA AGAAGGGGCG CGAGATGGTC
TCCACCCTGC CCAGCCGCTT CATCAAGGAA ATGGGCCTGG ACGCCGCCAC CTCGCGCGAG
GACCCGCGCG AGAAGCTGCG CCAGCTGCGC GCCGAGTTCG CCCTCAAGGC ACAGCAGTCC
ACGCCCGCCG ACTCCTGA
 
Protein sequence
MLPLPSLSRL SPRNAPMSAG LNLAQLQAVH YTEGPCLVLA GAGSGKTRVI THKIGRLIEM 
GMAPRRIAAI TFTNKAAAEM RERAAGLIGR QAKDVLVCTF HALGVRMVRE DGHVLGLKPQ
FSILDADDVT GILKDCSGGT TDLATARQWQ WTISNWKNAG WDSRKALAMA QDDNERSTAL
IMQRYEERLT AYQSVDFDDL IGMPMRLLKN HIEVREKWQR LLGHVLVDEY QDTNATQYEL
LKMLVGSRAH FTAVGDDDQS IYGWRGATLD NLKKLPVEFP QLKVIKLEQN YRSTSAILRA
ANNVIQPNPK LYPKTLFSEL GEGEPVRIVD CDTEEHEAER AVARIQSLRA ASNPPPDWKD
FAILYRANHQ AKPFEKALRK ASIPYKVSGG TSFFDRAEIK DLCAWFRLWI NNDDDPAFLR
AIGTPRRGIG HTTLGKLGEF SSQHKLSMFG ALFAHMLEAA LPKKAHDSLL EFGRYINDLE
YRARHTLGAE QSRGFMLDWL KEIGYEQYLY DSEDSESVAA ARWSNVLEFC DWMAQRAGGQ
IEDAAGTTTH TEVKSLLEVA RNIALLSTIS EREKEQDMVI LSTLHASKGL EWPHVMLVGV
TEGMLPFKLD DDNGRQQKVS DETAQRLQEE RRLMYVGITR ARRSLAVSWT KRRKKGREMV
STLPSRFIKE MGLDAATSRE DPREKLRQLR AEFALKAQQS TPADS