| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1065 |
|---|
| Symbol | |
|---|
| ID | 3229662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | + |
|---|
| Start bp | 967110 |
|---|
| End bp | 968297 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637120629 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_181780 |
|---|
| Protein GI | 57234195 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.929187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA TTACACCTGA AATCATTGAA AATGTCTGCC TGGAAAAAGG CGCTAACTCC
GGGCTTACCA AAGTAACCCT GACTGACCGT ACCCTGGAAA TTTTCGGGGG TATTCCGGGA
GAAACGGCAG ATATCCGCCT TTTTACCCAT AAAGCCGGAC GCGGCTATGC TCAGGTAATA
AAAGTGCATA ACCCCTCTGC CGAAAGGGTC CCTCCTGCCT GCCCGTATTT TGGTGATTGT
ACCGGCTGCA CCTTCCAGCA TATAAGCTAT CCCCACCAGC TGAAACTAAA GCACCAGATT
ATCTTGGCCG AATTTGAAAA AGCAGGGCTG GACAGCACTT ATATCTCAGA GGTAATACCC
TCAGCAGCCG AATATGGCTA CCGCAATCAT GCCCGTTTTT CCATATATCA CGCCAAGCTG
GGTTTTGTAA ACCGGTTTTC ACGCCGCCAT GTACAGGTAG ACCACTGCCG TATAATGAAC
TCCGGCATAA ATAAAGTCCT GGCAGAACTG CAAGATAAAT GCGGAGAGAC CCGCCAGCTT
TCCATCCGCC ACGCAAGCAA TAAAGACAGT TATCTTATCC AGCCTAAACT GACAAAAGCC
GATATAAGCA TTGAAAGCGG GCAGAAAGAG TACCATGACC TGCTGCTGGG GCATGATTTT
TGCATATCTG CCGCTTCGTT TTTTCAGGTA AACAACCCCC AGGCCGAAAA AATGGCCGGA
CTCATAAAAA AACACCTGAA CCTTAGCGGC GGGGAAACGC TGGTAGATGC CTATGCCGGA
GTGGGTACAT TTGCAGTCCT GCTCAGCCCT GACTGCAACA GGGTAATAGC CATTGAGGAA
TCTGCCGCCG CCATCAAGGA TGCCCGCCTG AATATTGCAG GCATAGATAA TATTGAACTT
ATCCAGTCTA AAACAGAGGA CGTTATCAGC CAGTTTCAGG GGCAAATGGA CGCACTTATA
CTTGACCCGT CACGTAGCGG AGCCCACCCG TCTGTCTTAG CCAGCATATG CCAAAACCCG
CCCCGTAACC TGGTATATGT GGCTTGTGAC CCGTCTTCAC TGGCCAGAGA CCTCAAAATA
CTGCTTGGCG GCCCGTTTGA ACTTTCACAG GTAATACCGG TGGATATGTT CCCCCAGACT
TACCATGTCG AGACGGTCTG CTTGATGTCA AGGGTCGAAG GAAAATAG
|
|---|
| Protein sequence | MNEITPEIIE NVCLEKGANS GLTKVTLTDR TLEIFGGIPG ETADIRLFTH KAGRGYAQVI
KVHNPSAERV PPACPYFGDC TGCTFQHISY PHQLKLKHQI ILAEFEKAGL DSTYISEVIP
SAAEYGYRNH ARFSIYHAKL GFVNRFSRRH VQVDHCRIMN SGINKVLAEL QDKCGETRQL
SIRHASNKDS YLIQPKLTKA DISIESGQKE YHDLLLGHDF CISAASFFQV NNPQAEKMAG
LIKKHLNLSG GETLVDAYAG VGTFAVLLSP DCNRVIAIEE SAAAIKDARL NIAGIDNIEL
IQSKTEDVIS QFQGQMDALI LDPSRSGAHP SVLASICQNP PRNLVYVACD PSSLARDLKI
LLGGPFELSQ VIPVDMFPQT YHVETVCLMS RVEGK
|
|---|
| |