| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2632 |
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| Symbol | |
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| ID | 4808943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 3110641 |
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| End bp | 3114177 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640108045 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001039024 |
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| Protein GI | 125975114 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATAT TATTAAAGGA TAAACAGTAT CTTATAGAGC CTCTTTTTGA GATAAAAGAG
TATACCAATG TGCTTGAGAA TATAAAAAGG GGAATACCTA CAACTGTTAC GGGCCCTTCG
GAATCCCAGA AAGTTCATAT AGCCTGTGCT CTGTGCGGCC ATTTGGGCTT GAAAGGCATA
TACATAGCTT ATAATGAGAT GCAGGCAAGA AAAATGTTCG AGGATGTTTC ATTTTTCTTT
GGAAAAGACG CAGTGTTTTT CCCGTCAAAA GAAATTATGC TTCATGATGT TGAGGCAAAA
AGCTATGATT CAATTTATGA GAGAATAAAT GCTCTTTACA GGATTGTGAA TGATGACTAC
GGCTTTATAG TAACAAGTGC GGAAGCATTG TGTCAAAAAC TTATTGACAG GAAGCTCTTT
AAAGAGAGCA TAGTAAATGT CGCTTTGGGG GACAGGATTG ATCTTGGCCT TTTTACGCAA
AAGCTTGTTT CAATAGGTTA TGAAAGAGTG ACAACTGTTG AAGGTAAAAG CCAGTTTGCG
GTCCGCGGAG GAATTGTGGA CATTTTTCCG GTAAATGCTG ACACGGCCGT AAGAATTGAA
CTTTTTGACG ATGAAGTGGA TTCCGTAAGA AGTTTTGACA CCATGACACA AAGGTCTGTG
GAAAACCTTG AAGCGGTAAC GATTTTGCCC GCAAGGGAGT TGATTTATCC TCCGGGCTTG
AGAGACTCTA TTATGGAAAA AATATTGAAT GACTTGAAGA TTCAAATAAA GAAAATGGAA
GGTAAAAACA ACAAAAGCGG GATACAAAAG CTGGAGGCTA AAATAAATTC CGATATCGAA
AGATTTTCCC AGGAATATTA TTTTGCGGGG ATGGACAGGT ATATTCCCTA TATTATCGAA
AAGCCGTCGG CCGTGATTGA TTATATAGAT TCCGAAATAC TTGTCTTTGT GGACGAACCG
AAGAGATTTG AGCAAAGAAT AGAAAATCTT ATAACGGAAA GCAATGAGAT GTGCAAAAGC
TTCATGGAGA ACGGACAGCT CCTTGCGGGA AGCTTTGACA TCTTTTTTGA TTGCAATTAT
TTGTGGGATA AGGTGAAAAA GTGTAAAAAC ACACTGTATT TTACCACTCT TCCCTCTGAC
GACGGACAGG AAGAAAAGAG GGAAAACATA GTTTCAAAGC TTCTTAACTC CTATCAGGGA
CATTTGGAAA TACTGGAGGA AGACATAAGT CACTGGAAGA AAAACAGGGC AAGAGTTGTC
ATCCTTTCGG GGACTAAAAG CCGAGGAGAA ATGCTGGCCG AGACTTTAAG AACAAAAGAT
ATTGAGGCTG TATACCTGGA GGAACCTCAC CGGGATATTC AGCCCGGAGA AGTGGTAATA
ACCCATGGTG TTTTAAACCG GGGATTCGAA TACCCAGGTA TCGGTTTTGT GGTGGTAAGC
GGAAAGGAAC TGTTTGGCCA GGAGAAAAAA ACAAGAAGGC ATAAATCCGC CAAGGGGAAG
AAAATAAGCG TATTTACCGA TTTGAACGTG GGTGACTATG TTGTTCACTA TGTTCATGGT
ATAGGAAAAT ATATAGGAAT TGAGCAGCTG GTGGTAGAGA ATGTAAAGAA AGATTATCTC
AAAATTCAGT ACAGTGACGG AGATTATCTT TATGTTCCCA CAAACCAGCT TGACCTGATA
CAAAAGTACA TAGGTTCGGA AGGGAAAACC CCGAAGCTTA GCAAACTGGG AGGAACGGAC
TGGGCAAAGA CAAGAGCCAG GACAAAGGAA TCATTAAAGG AGCTGGCTCA GGAGCTTATT
AATTTATATG CCCAGAGGGA AATGGCAGAA GGGCATGCTT TTGGAAAGGA TACCGTATGG
CAGAAACAGT TTGAGGATCT GTTTCCGTAT CAGGAAACGG AGGATCAGCT GAGATGCATT
GAGGAGATAA AAAGGGATAT GGAATCGCCG AGGCCCATGG ACAGGCTTCT TTGCGGCGAC
GTTGGCTACG GCAAGACCGA AGTGGCAATG CGGGCGGTGT TTAAAGCAGT TATGGACGGA
AAACAGGTGG CTTATCTGGT TCCCACAACG GTTCTTGCCC AGCAGCATTA CAACACTTTT
AAGGAAAGAA TGAAGGATTT TCCGATAACA GTGGAAGTAT TAAGCAGGTT TAGAACACAG
GCGGAACAAA AAAGGATATT GAAAGATGTA AAAGCCGGCA TGGTGGATGT GCTTATCGGA
ACTCACAGAC TTCTGCAGAA AGATGTTTGC TTCAAGGACC TCGGGCTTTT GGTTATAGAC
GAAGAACAGC GTTTCGGGGT GACGCACAAG GAAAAGATCA AACGAATGAA GACAAATATT
GATGTTTTGA CTCTTACGGC AACACCGATA CCGAGAACTT TGCACATGTC CCTTGTAGGG
ATCAGGGATA TAAGCACAAT TGAAGAGCCT CCGGAGGAAA GATACCCTGT TCAGACGTAT
GTCATGGAAT ACAACGATGA AGTGGTAAGA GACGCTATAA ACAGGGAAAT GAGCCGGGGC
GGACAGGTTT TTTATCTTTA CAACCGGGTA AGAGCCATAA ATCAAAAAGC GGCGGAAATA
CAAAAACTGG TTCCCGAAGC CCGGGTGGCC ATTGCCCACG GGCAGATGAA CGAGACGGAG
CTGGAAAACA TCATGTTCCG GTTTATAAAC GGTGAATATG ACATACTTGT GTGCACCACC
ATAATTGAAT CGGGACTGGA TATGCCGAAT GTCAATACCA TTATAGTGGA AGATGCCGAC
AAGATGGGTC TTGCCCAGCT TTACCAGTTA AGGGGCAGGG TTGGGCGTTC AAACAGGCTT
GCCTATGCCT ATATAACCTA CAAGAAGGAT AAGGTTTTAT CTGAAATTGC GGAAAAGAGA
CTTCAGGCCA TAAAAGAATT TACAGAATTT GGCTCGGGAT TTAAAATAGC AATGCGGGAC
CTTCAGCTAA GGGGCGCGGG AAATCTTTTA GGGCCGCAGC AGCACGGACA CATAGACTCT
GTTGGTTATG ACATGTATTG CAAGCTCTTG GCTGAAGCGG TGAACGAGCT TAGGGGCATA
CCTGTCACCA AGGAGGATGA GGAGATTTCC ATAGATGTAA ATGTAAGCGC CTATATAGAC
AATGATTATA TAGGTGATGA GAACCAGAAG ATTGATATGT ATAAAAAAAT TGCATCCATA
AATGATGAAC AGGATGTTAT AGATGCGGAG GACGAACTTA TGGACCGCTA CGGCGAAATA
CCGCAGCCGG TGAAAAATTT GCTTCAGATT GCATATATAA AATCTTTGGC TAAAGCATGC
GGATTCTCCT CTGTTCAGGA AAAGAACGAT ACTGTAATTT TTCAATACTC TGAAAGCAAA
AATATAAATT TTGAGGTATT GGGGAAACTC ATGGACAAAT ACAGAAGAAA ACTTCTTTTC
ACGGCAAGCA ACAGACCATA TATCACCTTT AAGACAACAG GAGTAAAAGG GGAGGAACTT
CTCGAAATTA TTAAGATTTT GTTACAAGAC GTTAAGAAAT TGCAGGAGGG TTTATAA
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| Protein sequence | MSILLKDKQY LIEPLFEIKE YTNVLENIKR GIPTTVTGPS ESQKVHIACA LCGHLGLKGI
YIAYNEMQAR KMFEDVSFFF GKDAVFFPSK EIMLHDVEAK SYDSIYERIN ALYRIVNDDY
GFIVTSAEAL CQKLIDRKLF KESIVNVALG DRIDLGLFTQ KLVSIGYERV TTVEGKSQFA
VRGGIVDIFP VNADTAVRIE LFDDEVDSVR SFDTMTQRSV ENLEAVTILP ARELIYPPGL
RDSIMEKILN DLKIQIKKME GKNNKSGIQK LEAKINSDIE RFSQEYYFAG MDRYIPYIIE
KPSAVIDYID SEILVFVDEP KRFEQRIENL ITESNEMCKS FMENGQLLAG SFDIFFDCNY
LWDKVKKCKN TLYFTTLPSD DGQEEKRENI VSKLLNSYQG HLEILEEDIS HWKKNRARVV
ILSGTKSRGE MLAETLRTKD IEAVYLEEPH RDIQPGEVVI THGVLNRGFE YPGIGFVVVS
GKELFGQEKK TRRHKSAKGK KISVFTDLNV GDYVVHYVHG IGKYIGIEQL VVENVKKDYL
KIQYSDGDYL YVPTNQLDLI QKYIGSEGKT PKLSKLGGTD WAKTRARTKE SLKELAQELI
NLYAQREMAE GHAFGKDTVW QKQFEDLFPY QETEDQLRCI EEIKRDMESP RPMDRLLCGD
VGYGKTEVAM RAVFKAVMDG KQVAYLVPTT VLAQQHYNTF KERMKDFPIT VEVLSRFRTQ
AEQKRILKDV KAGMVDVLIG THRLLQKDVC FKDLGLLVID EEQRFGVTHK EKIKRMKTNI
DVLTLTATPI PRTLHMSLVG IRDISTIEEP PEERYPVQTY VMEYNDEVVR DAINREMSRG
GQVFYLYNRV RAINQKAAEI QKLVPEARVA IAHGQMNETE LENIMFRFIN GEYDILVCTT
IIESGLDMPN VNTIIVEDAD KMGLAQLYQL RGRVGRSNRL AYAYITYKKD KVLSEIAEKR
LQAIKEFTEF GSGFKIAMRD LQLRGAGNLL GPQQHGHIDS VGYDMYCKLL AEAVNELRGI
PVTKEDEEIS IDVNVSAYID NDYIGDENQK IDMYKKIASI NDEQDVIDAE DELMDRYGEI
PQPVKNLLQI AYIKSLAKAC GFSSVQEKND TVIFQYSESK NINFEVLGKL MDKYRRKLLF
TASNRPYITF KTTGVKGEEL LEIIKILLQD VKKLQEGL
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