| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1756 |
|---|
| Symbol | |
|---|
| ID | 4810186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2075853 |
|---|
| End bp | 2077019 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640107169 |
|---|
| Product | putative virion core protein (lumpy skin disease virus)-like protein |
|---|
| Protein accession | YP_001038170 |
|---|
| Protein GI | 125974260 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4260] Putative virion core protein (lumpy skin disease virus) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000281872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTGA TAAACTTTAT CAAAGGACAA TTCATTGAAG TTATCGAATG GACGGATTCT
TCTGCAGATA CCATAGTTTA CCGCTTTCCT GTAGCAAACA AGGAAATAAA AATGGGAGCC
CAGCTAACTG TGAGAGAATC GCAGGTGGCT ATATTCATAA ACGAAGGTCA GTTGGCGGAC
GTTTTTGAAC CTGGAAGATA CGAACTTACG ACTGAAAACT TGCCGATTCT GACAAAGCTG
AAATCATGGA AGTACGGATT TAATTCACCT TTTAAAGCAG AAGTGTATTT TATAAACACC
AGACTGTTTA CCGAACAGAC TTGGGGTACC CAGTCACCCC TTCCGATGTT GGATCCTATG
TTCGGCCCAA TTGAGGTCGG AGCAAGGGGA ACATATGCCT TCAGAGTGTC AGACCCGGTA
AAATTCTTAA AAGACGTGTC AGGAACAAGG GGTACCATGG CAACTCAGGA TTTGACCAGG
ACTTTAAGGT CATATATTAT GACGTACCTT AAAGATACGG TTGCAGAATC CAAAAAGTCC
TTCTTTGAGA TGCAGAGCAA CATGCCTGAG TTTGCCGAAA TGGTTAAGGT GCATGCAAAG
AGCAAATTTG AAGCTCTTGG GCTTGAACTG GTTGAATTTA CGATTGAATC GCTGATTCTT
CCGGAAGAGC TCAGAAAAGC TTACCAGGAA GGCGCACAGA TAAATTTGAT GGGCGGTATG
GACACTTACG CCAAAAAGAG AGCTCTCGAC GCAATGAACT CAGCCGCGTC AAACCAGGGG
GGTGGCTCTT TTGCAAGCAT GGGTGCCGGA ATGGGAGCCG GAGCTGCGAT AGGCAATATA
ATGGGACAGG TTTTTGGCGG AGGTTTTCAG CAGAATCCCC AATACTATCA GCCTCAGCCA
CAGCCTCAGG TGCAGCCTCC GCAGCAGAGT GTGGTGTGTC CTTCGTGTAA AACCGGTGTG
CCCGCCGGGA CAAAATTCTG TCCAAACTGC GGCAAGTCTC TTGTGGAAGA GAAGGACAGG
TGTATTAAAT GCAATCATGA GATCAGCAAA GGAGCAAAGT TCTGTCCTGA ATGCGGAGAA
AAGCAGGAGG TAGTGTGCAA CAACTGCGGT GCGAAGCTTT CACCGGGAAC AAAATTCTGT
TCCGAATGCG GAACAAAGGT AGAGTAA
|
|---|
| Protein sequence | MGLINFIKGQ FIEVIEWTDS SADTIVYRFP VANKEIKMGA QLTVRESQVA IFINEGQLAD
VFEPGRYELT TENLPILTKL KSWKYGFNSP FKAEVYFINT RLFTEQTWGT QSPLPMLDPM
FGPIEVGARG TYAFRVSDPV KFLKDVSGTR GTMATQDLTR TLRSYIMTYL KDTVAESKKS
FFEMQSNMPE FAEMVKVHAK SKFEALGLEL VEFTIESLIL PEELRKAYQE GAQINLMGGM
DTYAKKRALD AMNSAASNQG GGSFASMGAG MGAGAAIGNI MGQVFGGGFQ QNPQYYQPQP
QPQVQPPQQS VVCPSCKTGV PAGTKFCPNC GKSLVEEKDR CIKCNHEISK GAKFCPECGE
KQEVVCNNCG AKLSPGTKFC SECGTKVE
|
|---|
| |