| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0949 |
|---|
| Symbol | carB |
|---|
| ID | 4811242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1135725 |
|---|
| End bp | 1138943 |
|---|
| Gene Length | 3219 bp |
|---|
| Protein Length | 1072 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640106368 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_001037376 |
|---|
| Protein GI | 125973466 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.742849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAA GGGATGATGT AAAAAAGGTC CTGGTTATCG GCTCGGGTCC TATTGTAATA
GGCCAGGCGG CGGAATTTGA CTATGCCGGA ACCCAGGCCT GCAGGGCTTT AAAAGAGGAA
AACATAGAAG TGGTGCTGGT TAACAGCAAT CCTGCCACAA TAATGACGGA TACCAATATA
GCTGATAGAG TATATATTGA ACCTCTTACG GTGGAGGTTG TAAAGAAAAT TATAATAAAA
GAAAAACCGG ACAGCATACT TCCCACTTTG GGAGGGCAGA CAGGACTTAA TCTTGCCATG
GAGCTTGCAG AGTCAGGATT TTTGAAGGAA CATGGCGTAA AACTTCTGGG AACTGCCACC
GAGGCCATAA AAATGGCCGA AGACAGACAG GCTTTTAAAG ATACCATGGA AAGGATAGGA
GAGCCTTGTA TTGCCAGCAA GGTGGTAAAC ACAGTTGAGG ATGCGCTGGA TTTTGCAAAA
GAAATCGCTT ATCCGGTTGT TGTGCGTCCT GCCTATACTT TGGGGGGAAC CGGCGGCGGA
ATTGCTTACA ATGAAGAAGA ACTGAAAGAG ATTGCATCCA ATGGTTTGAG GCTCAGCAGA
GTACACCAGG TACTTATCGA GAAATGTATC GCCGGTTGGA AAGAAATTGA GTATGAGGTT
ATGCGCGACA GCAAGGGTAA TGTAATTACC GTATGTAACA TGGAAAATAT CGACCCGGTA
GGAGTTCATA CCGGAGACAG CATTGTTGTT GCGCCTTCCC AAACGCTTAC GGACAGAGAA
TATCAGATGC TTCGCTCCTC GGCACTGAAG ATAATATCGG CATTGGGCAT CGAGGGAGGC
TGTAACGTTC AGTTTGCTCT AAATCCCAAC AGTTTTGAAT ATGCGGTAAT AGAGGTCAAC
CCAAGGGTGA GCCGTTCCTC GGCATTGGCC TCAAAGGCAA CGGGTTACCC AATTGCAAAG
GTTGCCACCA AGATAGCCAT AGGTTATGGT CTTGATGAAA TAAAAAATGC AGTGACTGGA
AAGACTTTTG CGTGTTTTGA GCCTACTTTG GACTATGTTG TAATCAAAAT ACCCAAATGG
CCTTTTGACA AATTTGTAAA GGCGAAAAGG ACTTTGGGAA CCCAGATGAA AGCCACCGGT
GAAGTTATGG CTATAAGCAG CTCTTTTGAA GGGGCTCTGA TGAAAGCTTT AAGGTCGCTG
GAACTGGGTA TTTTCACACT GGAACAGGAT ATTTACAAAA AGTTCAGTGC CGAAGAAATA
AGGCAAAAGA TAAAAGATGT CAGTGATGAG AGGATTCTTG TTATTGCCGA GGCAATAAGA
AGGGGCGTAA CGGTTGAGGA AATCAACAAT GTTACAAAGA TAGATTTGTT CTTCTTAAAC
AAAATCAAAA ATCTGGTCCT TATGGAAGAA AAGTTAAAAA CCATGAAGCT TTCGGATTTT
GACGAAGAAA CCTTAAGAAC GGTTAAAAAG ATGGGCTTTA CCGATGCGGT TATAGCAAAA
TATGTTGGAT GCGACAAAAA GGAAGTTACG GCAAAAAGAA AAGAGCTTGG CATTTGTGCC
GTTTATAAAA TGGTTGATAC CTGTGCCGCA GAATTTGAGG CCATGACACC TTATTATTAC
TCTACCTATG ATGAATGCTG CGAGGCTAAG AAATCGGACA AGAAAAAGGT GCTGGTAATA
GGGTCGGGAC CCATAAGGAT AGGCCAGGGT ATTGAGTTTG ACTACTGCTC GGTTCATTCG
GTATGGGGAT TGAAGCAGGA AGGTTATGAG ACTATAATTG CAAACAACAA TCCTGAGACG
GTAAGTACGG ATTTTGACAC AGCGGATAGG CTTTACTTTG AACCGTTGAC TCCTGAAGAC
GTGGAGAACA TTGTTGAAAA AGAAAAAGTA GACGGGGCAA TTGTTCAGTT TGGCGGACAG
ACTGCGATTA AACTTACAAA AGCCCTTGTG GAAATGGGAG TAAAAGTTTT TGGCACCGAA
CCTAAATATA TTGATGCCGC CGAGGACCGT GAGAAATTTG ACAGGATTCT CGAAGAACTC
GGTATTCCAA GACCTAAAGG AAAGACTATA TTTACCCTCG ATGAAGCTTT GGAGGCTGCA
AACGAATTGG GCTATCCTGT ACTGGTAAGA CCCTCATATG TACTTGGCGG ACAGGGTATG
GAAATAGCTT ACAACGACAA AGACATAGTA GAATTCATGG AGATTATAAA CAGGGTAAAG
CAGGAACATC CCATCCTGAT AGACAAGTAT ATGATGGGCA AGGAAATTGA AGTGGATGCC
ATATCCGACG GTGAGGATAT TTTGATACCC GGTATAATGG AGCACTTGGA AAGAGCCGGT
GTTCACTCCG GGGACAGTAT ATCCGTTTAC CCGACGCAGA CAATAGGGGA AAAGCTCAAG
GAAAAGATTG TGGATTACAC TCAAAAGCTT GCCAAAGCGT TAAGAGTTGT TGGATTGATC
AATATCCAAT ATGTGTATTA CAATAACGAG CTTTATGTTA TCGAGGTAAA CCCGCGTTCA
AGCCGTACCG TTCCGTATAT AAGCAAGGTA ACGGGAATAC CTATGGTAAA TATCGCTACA
AGGATAATGA TGGGCAAAAA ACTCAAGGAT TTCAATTACG GAACGGGACT TTACAAAGAA
TCGGAGTATG TGGCGGTGAA GGTTCCGGTG TTCTCCTTTG AAAAGCTTCA TGACGTTGAT
ACAAGCCTGG GACCTGAAAT GAAGTCCACC GGTGAAGTTT TGGGTATAGC AAAAACTTTC
CCGGAGGCGC TGTACAAAGG AATTATTGCG ACAGGAATCA AGCTCCCTAA AAAAGGCGGC
GCGATACTGA TGACTGTCAG GGATACCGAC AAGCCTGAGC TTGTACAGCT GGCGGAAGAA
TTTGAAAAGC TTGGATTTGA GCTTTATGCC ACGGGAAAAA CCGCCAACAT GCTGAACAAC
CAGGGAATTG CCACCAATGC CGTGAAAAAA ATTGGCGAGG GTGAGCCAAA TCTTCTGAAT
TTGATTGAAT CAGGAAAAAT AAGCCTTATA ATCAATACTC CTACAAAAGG AAGACAGCCT
GAAAGGGATG GATTTAAAAT AAGGCGAAAA GCCGTTGAAA TGTCGATACC TTGCCTTACG
TCCCTTGATA CTGCACGGGC TGTGCTGGAA TGCATAAAAC TGGAGAAAGA GGAAAAAGAC
CTTGAAGTTA TAGATTTGAG CGTATTTGAT AACCAGTGA
|
|---|
| Protein sequence | MPKRDDVKKV LVIGSGPIVI GQAAEFDYAG TQACRALKEE NIEVVLVNSN PATIMTDTNI
ADRVYIEPLT VEVVKKIIIK EKPDSILPTL GGQTGLNLAM ELAESGFLKE HGVKLLGTAT
EAIKMAEDRQ AFKDTMERIG EPCIASKVVN TVEDALDFAK EIAYPVVVRP AYTLGGTGGG
IAYNEEELKE IASNGLRLSR VHQVLIEKCI AGWKEIEYEV MRDSKGNVIT VCNMENIDPV
GVHTGDSIVV APSQTLTDRE YQMLRSSALK IISALGIEGG CNVQFALNPN SFEYAVIEVN
PRVSRSSALA SKATGYPIAK VATKIAIGYG LDEIKNAVTG KTFACFEPTL DYVVIKIPKW
PFDKFVKAKR TLGTQMKATG EVMAISSSFE GALMKALRSL ELGIFTLEQD IYKKFSAEEI
RQKIKDVSDE RILVIAEAIR RGVTVEEINN VTKIDLFFLN KIKNLVLMEE KLKTMKLSDF
DEETLRTVKK MGFTDAVIAK YVGCDKKEVT AKRKELGICA VYKMVDTCAA EFEAMTPYYY
STYDECCEAK KSDKKKVLVI GSGPIRIGQG IEFDYCSVHS VWGLKQEGYE TIIANNNPET
VSTDFDTADR LYFEPLTPED VENIVEKEKV DGAIVQFGGQ TAIKLTKALV EMGVKVFGTE
PKYIDAAEDR EKFDRILEEL GIPRPKGKTI FTLDEALEAA NELGYPVLVR PSYVLGGQGM
EIAYNDKDIV EFMEIINRVK QEHPILIDKY MMGKEIEVDA ISDGEDILIP GIMEHLERAG
VHSGDSISVY PTQTIGEKLK EKIVDYTQKL AKALRVVGLI NIQYVYYNNE LYVIEVNPRS
SRTVPYISKV TGIPMVNIAT RIMMGKKLKD FNYGTGLYKE SEYVAVKVPV FSFEKLHDVD
TSLGPEMKST GEVLGIAKTF PEALYKGIIA TGIKLPKKGG AILMTVRDTD KPELVQLAEE
FEKLGFELYA TGKTANMLNN QGIATNAVKK IGEGEPNLLN LIESGKISLI INTPTKGRQP
ERDGFKIRRK AVEMSIPCLT SLDTARAVLE CIKLEKEEKD LEVIDLSVFD NQ
|
|---|
| |