| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_3179 |
|---|
| Symbol | |
|---|
| ID | 4028704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 3544512 |
|---|
| End bp | 3545783 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637968393 |
|---|
| Product | type III effector Hrp-dependent outers |
|---|
| Protein accession | YP_575222 |
|---|
| Protein GI | 92115294 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGC CCATCATCGG TTGCATTGCC GACGATTTCA CCGGCGCCAC GGACGTGGCG
AGCATGCTGG TCAGTGCCGG CATGCGCACG CTGCAGACCA TCGGCGTCCC GTCGACGGCG
CTGGACGATG ACGTCGAGGC CGTGGTCGTC GCCCTCAAGT CGCGCACCCT GCCCGCCGAC
GAGGCCGTGG CACAGTCTCT CGAGGCGTTG GCGTGGTTGC AGGCCCAGGG CTGCGAACAG
TTCTATTTCA AGTACTGCTC GACGTTCGAC TCCACGCCCG CGGGCAACAT CGGGCCGGTG
ACCGACGCGC TGATGACGGC GCTGGACACC GACTTCACCG TGGCCTGCCC GGCACTGCCC
GCCAACCAGC GCACCGTCTA CAACGGCTAC CTGTTCGCAG GGGGCGTGCC GCTCAACGAA
AGCGGCATGC AGGATCACCC CCTCACGCCC ATGACGGATG CCAATCTGGT GCGCGTTCTC
GGCGCCCAGA CGCACCAGCG GGTCGATCTG ATCGACTACG CCACGCTCAG CGAGGGTGTC
GAGGCCGTCG AGGCCCGCAT GCAGGCACTG CGCTCGGCGG GCGTGGGCAT CGCCGTTTGC
GACGCCATCG ACACGCAACA TTTGCATACC CTGGCACGCG CCTGTCGCCA CCTGCCCCTG
GTGACCGCCG GCTCCGGGCT GGCCCTGGGG CTGCCCGCCA ACCTGACCGA TCGCTTGCCT
GCGGCAGGAC AAGCCGATGC ATTGCCCGCC ATCGCCGGGC GAGAGGCCAT CTTGAGCGGC
AGCTGTTCGC GCGCCACCCT GGCGCAGCTC GAACATGCCC GCGAGCACTA CCCGAGCCAT
TACCTCGACG CTCTGGCCTT GGCCGATGAT TTCGAAGGGG TCATCGCGGC GGCGCTCGCG
CTGGCCGAAG AGCATCTCGA TCGTGGCCCG GTGCTGCTGT ATGCCAGCGC CTCGCCGGAA
GACGTGCGAC GGGCGCAGGA GGTCCTCGGC GTCGCGGAAG CGGGGGCCCT GGTCGAACGC
GCCATGGCCG AGATCGCCCA GTCCCTCGTC GAGCACCATG GCGTACGGCG CTTGCTCGTG
GCGGGAGGCG AAACCTCCGG CGCGGTGGTC AACGCGCTTG GGGTGCAAGG CTTGCGCATC
GGCCCGAGCA TCGATCCCGG CGTGCCCTGG ACCACCACCT TTGGCACGCC GGCGCCGCTC
GCCCTGACCC TCAAGTCGGG CAACTTCGGG GCCCGGGACT TCATGACCAA GGCATGGAGG
ATGTTGCCAT GA
|
|---|
| Protein sequence | MTMPIIGCIA DDFTGATDVA SMLVSAGMRT LQTIGVPSTA LDDDVEAVVV ALKSRTLPAD
EAVAQSLEAL AWLQAQGCEQ FYFKYCSTFD STPAGNIGPV TDALMTALDT DFTVACPALP
ANQRTVYNGY LFAGGVPLNE SGMQDHPLTP MTDANLVRVL GAQTHQRVDL IDYATLSEGV
EAVEARMQAL RSAGVGIAVC DAIDTQHLHT LARACRHLPL VTAGSGLALG LPANLTDRLP
AAGQADALPA IAGREAILSG SCSRATLAQL EHAREHYPSH YLDALALADD FEGVIAAALA
LAEEHLDRGP VLLYASASPE DVRRAQEVLG VAEAGALVER AMAEIAQSLV EHHGVRRLLV
AGGETSGAVV NALGVQGLRI GPSIDPGVPW TTTFGTPAPL ALTLKSGNFG ARDFMTKAWR
MLP
|
|---|
| |