| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1567 |
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| Symbol | |
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| ID | 4028132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chromohalobacter salexigens DSM 3043 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007963 |
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| Strand | - |
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| Start bp | 1783267 |
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| End bp | 1786719 |
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| Gene Length | 3453 bp |
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| Protein Length | 1150 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637966756 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_573619 |
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| Protein GI | 92113691 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTATT TTTCACCGCT CGATCCTCCG TCCCCACGGG GCCTGCGCGA TACGCTTTAT
TGGCAGCGTC CGCATGCCGC CGCCAGCGCC TTGTCACTGG CGCGCCTGGC CGATGACGCC
CCCTTGATGG TCGTGGCACC CAACACCGCC AGCGCGCAAC GCCTCGAAAG CGCCCTGCAG
TTCTTCGCCG ATCATCCCAT CCTGTCGTTC CCCGACTGGG AAACGCTGCC CTACGACAGC
TTTTCGCCGC ACCAGGACAT CGTGTCGACG CGCCTGAAGA CGCTGCGCCA GTTGCAGGAA
GGCACCCGAG GCATCGTCGT GGTGCCCATC AACACCCTGA TGCAGCGCCT GTCGCCCACC
GACTATATCG CCGGTCGCGT GCTGACGCTG CGCACCGGCA TGCAGCTCGA CCGGGAAGGG
TTTCGCGACC GTCTGTCCCG CGCCGGGTAT CGTGCCGTGG AGACCGTCTA CGAACCGGGC
GAGCACGCGC TGCGCGGCGC CCTGATCGAC CTCTACCCGA TGGGCAGCGA CCACCCCCTG
CGCATCGACC TGTTCGATGA CGAGATCGAC ACCCTGCGGC ACTTCGACCC CGACACCCAG
CGCTCGCTGG ACAAGATCGA GCGAATCGAG CTGCTGCCCG CGCACGAATA TTCGCTCTCG
CGTTCGGCGA TCGCCTGTTT CCGCGAAGGG TTCGAGACGC TGTTCGACGT CGATCCGCGC
CAATGCCCGC TCTACAACGA TGCGCTCAAG GGCATCCCCT CTCCGGGTCT GGAGCAGTAC
CTGCCGCTGT TCTTCGAGGA GACCGCGACC CTGTTCGAGC ATCTGGCGGA CAATACCCGC
ATCGCCCTGC TGCCCGGCGT GCACGACGCC GCCGAGCATC ACTGGAGCGC CATCGAGAGC
CGTTACGACA ACCTCGGCGT CGACCCCACG CGCCCGTTGC TGCCGCCGGC GCACGCCTTC
GTGCCGGTTG CCGAGGTGTT CGCCGCCATC AAGCGCCATC CGCGCGTGGC GATCGTCGAG
GAAGACGAAC AGCAGCCGCA CGCCGTGGTG CCGACCACCC AGCCGCCTCC CGACGTCGCC
ATCAATGCCC GTGCGCATCG TCCGCTGGCC AAGCTCGAAT CCTTTCTCGC CGCGCACGAT
GACCTGCGCA TCCTGCTCGT CGCCGAATCC AGCGGCCGTC GCGAGGCCCT GGAGGAAACT
CTCGCCCCCC TGGGGCGCCC GCTGGCCGTG GCCGAGGGCT GGCAGCACTT TGTGGACGGC
AGTGCCCCGC TGGCGATCTG CGAGGGCAGT CTCGACGAAG GCCTGTGGCT CGAGGATGCG
AGCACCTGCG TCATCACCGA GACGGAACTG TATGGCGACG TCGTGCGCCA GGCACGTCGC
CGGGGCCGCG CCACCGACGA CAACGAGCTC GCCGTGCGTC ACCTGGCGGA ACTGCGTCCC
GGCGCCCCGG TCGTGCACCA GAGCCATGGC GTGGGTCGCT ATCAGGGGCT GGAAACCCTC
GAGGCCGGCG GCCAGGCCGC CGAGTTCCTG GCGCTGGAGT ACGCCGGTGG CGCCAAGCTC
TACGTGCCGG TGGACAGCCT GCACCTCATC TCGCGCTATG CCGGCGCCAC CGACGAGCTG
GCACCGCTGC ACAAGCTCGG CTCGGAGACC TGGGACAAGG CCAAGCGCAA GGCCGCCGAA
AAGATCCGCG ATACCGCCGC CGAACTGCTC GATACCTATG CGCGGCGCGA GGCCCGCGAG
GGCTTCGCCT GTGCCCCGCC CGACGAGGAC TACGCGCGTT TCGCCGCCAG CTTCCCTTTC
GAGGAAACGC CCGACCAGCA CGCGGCGATC GAGGCCGTCA TCGGCGACAT GACCGCCGCG
CGGCCCATGG ACCGCGTGGT CTGCGGCGAC GTCGGGTTCG GCAAGACCGA GGTCGCCATG
CGCGCGGCCT TCCTGGCGGT CGAATCCGGA CGTCAGGTCG TGGTGCTGGT GCCCACCACG
CTGCTGGCCC AGCAGCACTA CGACAACTTC CGCGACCGCT TCGCGGATAC CGCGGTGCAG
ATCGAGCTCA TCTCGCGCTT CACCGCCGGC AAGGGGCAGC AGGCTTCGCT CGAGCGCATC
ACCGAAGGAC GCGCCGATAT CGTCATCGGT ACCCACAAGC TGCTGTCCAA GTCGATGTCG
CTGCCCAACA TGGGACTGCT GATCATCGAC GAGGAGCACC GCTTCGGCGT CTCGCAGAAG
GAAAAGCTCA AGGGTCTGCG TGCCGAGATC GACATCCTGA CGCTGACGGC AACGCCCATC
CCGCGCACCC TGAACATGGC CATGAGCGGT ATCCGCGACC TCTCGATCAT CGCCACGCCG
CCGGCGCGCC GTCTCTCGGT CAAGACCTTC GTGCAGCAGC GCAACGAGGG GGTCCTGAAG
GAAGCCCTGC TGCGCGAGAT CCTGCGTGGC GGCCAGGTCT ACTTCCTGCA CAACGAGGTC
AAGACGATCG ACGCCACCGC CGCCAAGATC ACCGAACTGG TGCCCGACGC GCGAGTGGGG
ATCGCCCACG GCCAGTTGCC GGAGCGCGAG CTGGAGCGGG TGATGTCGGA CTTCTACCAC
AAGCGGTTCA ACGTGCTGGT GTGCTCGACC ATCATCGAGA CCGGGATCGA CGTGCCCAGC
GCCAACACCA TCATCATCGA ACGCGCCGAC AAGTTCGGTC TCGCGCAGCT GCACCAGTTG
CGCGGCCGCG TGGGCCGCAG CCATCACCAG GCCTATGCCT ACCTGCTCAC GCCGCCGCCC
AAGGCCATGA CCCGGGACGC CCTCAAGCGA CTCGAGGCAA TCGGCCAGGC GGAAGACCTC
GGTGCCGGCT TCACCCTCGC CAGTCACGAC ATGGAAATTC GGGGCGCCGG GGAACTGCTC
GGCGACGAGC AGAGCGGGCA GATGGAAACG ATCGGCTACA GCCTCTATAT GCAAATGCTC
GATCGCGCGG TCAAGGCCAT CAAGAGCGGC AGAACGCCGA ACATCGAGGC CCCCCTCGAC
GAGGGCGTGG AAGTCAGCCT CAATCTGCCG GCCTTGATCC CCGACGACTA CCTGCCGGAC
GTGCAGCAGC GCCTGATCAT GTACAAGCGC ATCGCCAATG CCGAGAGCGA GGGCGAGCTC
AAGGAGCTGC AGGTGGAAAT GATCGACCGT TTCGGCCTGC TGCCGGCGCC GCTCAAGACG
CTGTTCCGCC AGACCCGGCT GCGTCAGCGT GCCGAACGCC TGGGCATCAC GCGGCTGGAG
GCGGGCGCCG AGCGTGGCCG CATGACCTTC GGTACCCAGA CGGCCGTCGA CCCGATGACG
CTGGTCGAGA TGATCCAGCG CGATCCCGCC CACTATCGCC TGGATGGGGC CGACACCCTG
CGCTTCGAGG GCGAGATGGC CGACGAGGAG TCTCGTTTCG CCCTGCTCGA AGCCTTGCTG
GAGCGCCTCA ACCAGAAGGC CAAGGCGGCG TGA
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| Protein sequence | MSYFSPLDPP SPRGLRDTLY WQRPHAAASA LSLARLADDA PLMVVAPNTA SAQRLESALQ
FFADHPILSF PDWETLPYDS FSPHQDIVST RLKTLRQLQE GTRGIVVVPI NTLMQRLSPT
DYIAGRVLTL RTGMQLDREG FRDRLSRAGY RAVETVYEPG EHALRGALID LYPMGSDHPL
RIDLFDDEID TLRHFDPDTQ RSLDKIERIE LLPAHEYSLS RSAIACFREG FETLFDVDPR
QCPLYNDALK GIPSPGLEQY LPLFFEETAT LFEHLADNTR IALLPGVHDA AEHHWSAIES
RYDNLGVDPT RPLLPPAHAF VPVAEVFAAI KRHPRVAIVE EDEQQPHAVV PTTQPPPDVA
INARAHRPLA KLESFLAAHD DLRILLVAES SGRREALEET LAPLGRPLAV AEGWQHFVDG
SAPLAICEGS LDEGLWLEDA STCVITETEL YGDVVRQARR RGRATDDNEL AVRHLAELRP
GAPVVHQSHG VGRYQGLETL EAGGQAAEFL ALEYAGGAKL YVPVDSLHLI SRYAGATDEL
APLHKLGSET WDKAKRKAAE KIRDTAAELL DTYARREARE GFACAPPDED YARFAASFPF
EETPDQHAAI EAVIGDMTAA RPMDRVVCGD VGFGKTEVAM RAAFLAVESG RQVVVLVPTT
LLAQQHYDNF RDRFADTAVQ IELISRFTAG KGQQASLERI TEGRADIVIG THKLLSKSMS
LPNMGLLIID EEHRFGVSQK EKLKGLRAEI DILTLTATPI PRTLNMAMSG IRDLSIIATP
PARRLSVKTF VQQRNEGVLK EALLREILRG GQVYFLHNEV KTIDATAAKI TELVPDARVG
IAHGQLPERE LERVMSDFYH KRFNVLVCST IIETGIDVPS ANTIIIERAD KFGLAQLHQL
RGRVGRSHHQ AYAYLLTPPP KAMTRDALKR LEAIGQAEDL GAGFTLASHD MEIRGAGELL
GDEQSGQMET IGYSLYMQML DRAVKAIKSG RTPNIEAPLD EGVEVSLNLP ALIPDDYLPD
VQQRLIMYKR IANAESEGEL KELQVEMIDR FGLLPAPLKT LFRQTRLRQR AERLGITRLE
AGAERGRMTF GTQTAVDPMT LVEMIQRDPA HYRLDGADTL RFEGEMADEE SRFALLEALL
ERLNQKAKAA
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