| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0458 |
|---|
| Symbol | |
|---|
| ID | 4027989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 506019 |
|---|
| End bp | 507854 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637965616 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_572519 |
|---|
| Protein GI | 92112591 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTCCG TCTTCACGCT CAACCGTCCC CTGGTCTGGA CGGGCATTGC CGCCATGGCT
TCCATGAGCC TCTTGCCGAC GCTGATGTTG CGAATGGCGG CATTGGTCGT GGTGCTGGTG
GGAGGATGGG ACGCCTGGCG GCAAATCCGT CTGGAAGCGA CGCGTCGTCG CTTGACCGAG
ACGGCCCTCA CCTTGTCGCC CGATGGCGTG TTGATCTCCA ACGCCCAGAA CCGTATCCAG
GCGGTGAACC CGGCCTTCAC GCAGATCACC GGTTACAGCG TCGACGAGAT TCGCGGCCTC
GACCCTTCGG TACTGTCGTC CGGACGCCAC GACAAGGCCT TCTACGAACG ATACTGGCAG
ACCCTCAATG CCACCGGGCA GTGGGAGGGC GAGGTCTGGA ATCAGCGCAA GCATGGCGAC
GAGTTCCCCG AGTGGTTGCG GGTGCACGCG GTGACCGATG CCAAGGGACG CGTGACGCAC
TACGTGGGGC TGTTTACCGA CATCAGCCGC CACAAGGCGC GGGAGCAGGA TCTTCAGCGC
ATCGGCTTCG AGGACCCGTT GACCGGGCTG CCCAATCGGC GGCGCTTGCA CGACTTGCTG
GCATCACGCC TGCAGCGCCT GCGGGCGGGG GAGGAGCTGG ACATCGCGCT CATCGATATC
GACGGCTTCA AGGCGGTCAA CGATGCCATG GGCGTCGACA AGGGGGACCG TCTGCTGTCG
CGTTTCGGTC AGCGGCTCGC GGCCTTCGTC GCCGGGGGCG TGGTGGGACG CCTGGGGGGC
GACGAGTTCA TGGCCATCCG CACCACGACC TTCGATGATC ACGAGCAATG GGTGGAGGAA
CTGCGGGGAC ACCTCAGCGA GCCCTTCGAG ATCGGCGAGA CGCCGCTGCG CCTGGGGCTC
ACCATCGGCA GTTGCCGGTC CCCCGACGAT GGCCGCGATG CCGGGGTCCT GTTCCAGCGG
CTGGAGTCGG CGCTGTATGC CGCCAAGCGT CATGGGCGCA ACCACAGCCG TCGCTTTCGT
CCCTCGCTGG AGGTGGAAGG CGATCCGCAG CTCGAACTGC TCAACGAATT GCGCCAGGCG
CTGGCGCATG GCACGCAACT GGAGCTTTTC TACCAGACAC AGCACTATCT CGACGATGGA
CGGCTGGCCG GGATGGAAGC CCTGCTGCGC TGGTACCATC CGACGCAGGG CATGATTTCG
CCGGCCAGCT TCATTCCCCT GGCCGAGCGT CACGGGTTGA TGAGCGCGCT GGGCGACTGG
GTGATCGAGC GCGCCTGCGC CCAGGTGGCG GCCTGGCGCC AGCAGGGGGT GTCGTTCGTG
CCGGTGTGGA TCAACATCTC CGCGGTGCAG CTCATCCAGG GCGACCTCGA GGCCAAGCTG
TCCGCCAGCC TGGCCAAGTA TCACGTGCCG GCCGCCATGC TGGGGTTGGA GCTGACCGAA
TCGGTACTGC TCGACGAGCG GGCCGGGGAT ATCTCGGCGC GACTCGTCGC TCTGCGCGAC
AAGGGCCATC CGATCGCCAT CGACGATTTC GGTACCGGCT ATTCCTCGAT GGCGTATCTC
AAGCAACTGC CGGTGGACAA GCTGAAACTC GACCGGGCCT TCGTGCGGGC CCTGCCCGAG
GACAGTGCCG ACGCGGCGAT CACCTCGGCG GTACTGGCCA TGGCGCGGGG GCTGGAGCTG
GACGTGGTCG CCGAGGGCGT GGAAACCGAG GAGCAGCGTG ACTTCCTCCT GGCCCAGGGG
TGCGCCATGG TACAGGGCTT CCTCTATGCG CGCCCCGAGC GGGTTGCCGA TGTCGAGGCG
CGCCTCAGGC GCGACGCCGA AGTGTCGCTG CCCTGA
|
|---|
| Protein sequence | MWSVFTLNRP LVWTGIAAMA SMSLLPTLML RMAALVVVLV GGWDAWRQIR LEATRRRLTE
TALTLSPDGV LISNAQNRIQ AVNPAFTQIT GYSVDEIRGL DPSVLSSGRH DKAFYERYWQ
TLNATGQWEG EVWNQRKHGD EFPEWLRVHA VTDAKGRVTH YVGLFTDISR HKAREQDLQR
IGFEDPLTGL PNRRRLHDLL ASRLQRLRAG EELDIALIDI DGFKAVNDAM GVDKGDRLLS
RFGQRLAAFV AGGVVGRLGG DEFMAIRTTT FDDHEQWVEE LRGHLSEPFE IGETPLRLGL
TIGSCRSPDD GRDAGVLFQR LESALYAAKR HGRNHSRRFR PSLEVEGDPQ LELLNELRQA
LAHGTQLELF YQTQHYLDDG RLAGMEALLR WYHPTQGMIS PASFIPLAER HGLMSALGDW
VIERACAQVA AWRQQGVSFV PVWINISAVQ LIQGDLEAKL SASLAKYHVP AAMLGLELTE
SVLLDERAGD ISARLVALRD KGHPIAIDDF GTGYSSMAYL KQLPVDKLKL DRAFVRALPE
DSADAAITSA VLAMARGLEL DVVAEGVETE EQRDFLLAQG CAMVQGFLYA RPERVADVEA
RLRRDAEVSL P
|
|---|
| |