| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7100 |
|---|
| Symbol | |
|---|
| ID | 8363292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8882282 |
|---|
| End bp | 8885479 |
|---|
| Gene Length | 3198 bp |
|---|
| Protein Length | 1065 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644969233 |
|---|
| Product | YD repeat protein |
|---|
| Protein accession | YP_003126702 |
|---|
| Protein GI | 256426049 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAAGCT TACTGACGGT TAGTTTCCTT GTACCTTTTC TTATCAACCA CATGAGAAGT
TTATTTTTTA CTGCAGCATT TATGCTGTTT GAAGTTTCTT GTGCTGATCT GTTTGCGCAG
ACTGTCACAC CTCCAAGTAC AACGTTGGGT AAAATTGTTT CTGCTTCCCC GGAGGCTGCC
TCAATAGCGT TGTATCAGAA TTATCCTGTT GACTATGTTT CAGGAGCTCC GGACATCACT
ATTCCATTAT TTGATGTACC GACAAGGGCA GGAACACTGC CATTCCAATT GAGTTATCAC
ATTGGGAAAT TAAAACCTAA CGAGCAACCT GGAGGACCGG GATGGGGCTG GACATTGACG
CCCAATCTCG GAATTACCCG GTCAGTCAAA GGTATTATGG ATGGCGTCAA TGCAGGATAC
CCTGCTAATT CGCAATTCGG GCAGAATACT GAGGCTTATT TACTAGGAGC ATCGCTGTAC
TCATATGATG AGCAGCCAGA TGATTTTTAC TATTCTTTGT TGTCAAAAAG TGGGCAGTTT
GTTTATAATC GTTCCGGCGC ATTTAGACCT GTTTCTTTTG ATGCAGTGAA GATATCACAC
CCGGATGATA ATACTTTTCA GATTACGGAT GATGACGGGA CCATTTATAA GTTTGGAAAA
TATTCATCCG GTACAAGTGT TGTAACAGAG TTTTCAGGCG GTGGGTCACC AACTACTTTG
TCTGCGTGGA AGATTACTGA GATCATTCCA TATGACAAAT CGGATACCAT CCGATTTAAC
TACAATCCCC GTACTACTTA CACAATGCCC TACTATAATA TACAGTGGCA GTTTATAGAG
TATGTTGGAG CAAATAGTAT TCCTGGTGGT GTTGGTAAGC CTGTGAATAT TTATCAGAAC
GTATATAACG TTGCCGATGG AATTCCTACC GGTGCATCAG TATTAAGACC TTCCGGAGTA
ACGACTGGTA ATTATTATGT TAATGAACCG CTCGATCTTC TTCCACAATT TGCAATTGGT
GAGTCAGAAT ATAAGATTCG CCTTAGTGGC TCTCATGTTG GTACTCAAAG GGAGCAGGCT
GCGTGGGCTG GACTGGATTA TGGATCAGAT CACGTTGCGA ATGTAATGTC GGATGTTCAA
ACACAGGAAT TACCACTCAG TGAGATCCGG TTTAAAGGCG GAAGGGTTTC CTTTTACTAT
ACAGAGAACA ATCAGTTGAC AAACATTTTT TTATATGCAG GTTCCCAACT TGTAAAAAGA
GCAAGCCTGT TTCAACACGC GCTACAACAT GCCAGTTATG AACAGCCCTT TTCTTATTAT
GATAACCTGA ATACGAGATA TGGACTGGAT TCCGTGAAAG TGTATGGATC CGATATGACT
AGTCCTGTTG TTTATAGAAT GGAATATAGT AAACAGAATG ATGAAGAGTG TGTTGGCGTA
TATGGTAATT ATAATACTGA TTTTTGGGGG TTTGTAAACA ATAAACGCGC ATATGTTATA
CCGCATTTGA TGTACTATGT AGCCAACTTT GTTTGGAACA CATTGCTTGA GAACCCCGAT
CCTGCCAACT TATATGGTTC CCCGAAGAAT GCAGGTGGAT GGGTGGAAGT TGGAAGTCAG
CAGGAACAAA CTTCTCCGAC GCGTATGGTG CCGGGTATCA TAAAACGCCT CTACTATCCA
ACAGGTGGCT ATGCTGAGTT TGATTTTGAA AGTAATCAGT ATGCTTCTTC TATAGATTAT
ACGAAAACTA TTTATGGGGG CGGATATCGT GTGAAACAAA TAAAGTATAC GACAGGTGAT
AGAAGAGATT CTATTACTAA GGTATATAGA TATGGCCTTG ATGAAAATGG TATTGGAAAG
ACAAAGTATA AAAATTATAC AGCGAATTTT ATATCTGTTC AATATGTGAA TTCCACGATG
TCAGGACAAT CTGATAATTA TCTGCAGAGA ATAGCAACTG TTAATTCAAA ACCATTCCTG
GATATGTCTT TCTCTTCCGG AGCAGCAGTA TTATATCCTT ATGTAACGGA ATACACAGTG
AATCCTGTCA ATAACCAAAC ACTGGGAAAA ACCGTGTATG AGTATGTCAT AGACTCAAAA
AATGATATGT GGGTAAATAT GACCCCTTTG CATTCAGATC CGAAAGACGA TTGGAAGATT
ATATCGTTAG TATCGGTTAC GAATTATCGT TATAGGAATG GTCGTTATAA TATACTTAGC
AGAACGCAGA ATAAGTATAT GGACTATTAT ACAGATACTA TACCTGCTGC GCAGACATTC
TTAAATTATT ATAATAATGC AGCTAGTGGC GGACTTGATG TGATTGCCGG TAATCCTCCA
CAGGTAGGAG CTAAGTTCTC CCATATTAGC TATAATATAT ACTGTGGTTC ACATAAGTTG
ACAGAGATTA ACGATACTAC GTTTGATGCT GAGGATTCAA CCAGATATAT GGCGAGTCAG
ACTGCAATTT CATATGATCC TATCTATTTA TATAGGAATA GAGAAGTGAA AAATGATAGC
AGAAATATAC AAAAGCGAAC AGAGTATTTT TATCCTCATC AAGCGGGTCA GATTTCTGAT
CTGATCGTTG GTCAGCTGCC TATCCTGAAT GCACTGACCT CATCGAATGT ACTGAGAAAA
CCTATAGCTA CTAAGGAATA TAGTGATACT ATATTGCTGC GAACTATTCA GCAGAGCTAT
GTGCAATATC CAAATTCAAA AATATTTCCA TCAGCTGTGT ATACGTCGAC AAGAAGAAAT
CCCCTGGAAA AGAGGGTTGA ATTTAGTTTA TATGACAATG ATGGCAATAT ACTTGAGCAG
CGTAAAGCCG ATGACGTAAA GGATGTGTAT CTCTGGGGAT ATAAATCACA ATATCCTGTA
GCTAAAGTGA CTGGTAGCAC CTATGATATT GTAAAGACAT TTGTAAGTCT GTCTTTATTG
GATAGCGCTC AGAGCTATAC GGATGTTCGT GTTAGAGAGG AGCTTAATAA AATCAGAACG
GGATTAGCTG GTACTGTAGC TAAGGTATGT ACTTATACCT ATAAGCCAAT GGTAGGTATG
ACTAGTGAAA CGGATGCCAA TGGCAAAACG ATATATTACG AATATGATGT CTTAGGACGT
TTGATTGTAG TCCGCGATCA GGATGGAAAT ATACTTAAGC AAATGGAATA TCAATATCAG
GTTCCTATTA CAAAATAA
|
|---|
| Protein sequence | MSSLLTVSFL VPFLINHMRS LFFTAAFMLF EVSCADLFAQ TVTPPSTTLG KIVSASPEAA
SIALYQNYPV DYVSGAPDIT IPLFDVPTRA GTLPFQLSYH IGKLKPNEQP GGPGWGWTLT
PNLGITRSVK GIMDGVNAGY PANSQFGQNT EAYLLGASLY SYDEQPDDFY YSLLSKSGQF
VYNRSGAFRP VSFDAVKISH PDDNTFQITD DDGTIYKFGK YSSGTSVVTE FSGGGSPTTL
SAWKITEIIP YDKSDTIRFN YNPRTTYTMP YYNIQWQFIE YVGANSIPGG VGKPVNIYQN
VYNVADGIPT GASVLRPSGV TTGNYYVNEP LDLLPQFAIG ESEYKIRLSG SHVGTQREQA
AWAGLDYGSD HVANVMSDVQ TQELPLSEIR FKGGRVSFYY TENNQLTNIF LYAGSQLVKR
ASLFQHALQH ASYEQPFSYY DNLNTRYGLD SVKVYGSDMT SPVVYRMEYS KQNDEECVGV
YGNYNTDFWG FVNNKRAYVI PHLMYYVANF VWNTLLENPD PANLYGSPKN AGGWVEVGSQ
QEQTSPTRMV PGIIKRLYYP TGGYAEFDFE SNQYASSIDY TKTIYGGGYR VKQIKYTTGD
RRDSITKVYR YGLDENGIGK TKYKNYTANF ISVQYVNSTM SGQSDNYLQR IATVNSKPFL
DMSFSSGAAV LYPYVTEYTV NPVNNQTLGK TVYEYVIDSK NDMWVNMTPL HSDPKDDWKI
ISLVSVTNYR YRNGRYNILS RTQNKYMDYY TDTIPAAQTF LNYYNNAASG GLDVIAGNPP
QVGAKFSHIS YNIYCGSHKL TEINDTTFDA EDSTRYMASQ TAISYDPIYL YRNREVKNDS
RNIQKRTEYF YPHQAGQISD LIVGQLPILN ALTSSNVLRK PIATKEYSDT ILLRTIQQSY
VQYPNSKIFP SAVYTSTRRN PLEKRVEFSL YDNDGNILEQ RKADDVKDVY LWGYKSQYPV
AKVTGSTYDI VKTFVSLSLL DSAQSYTDVR VREELNKIRT GLAGTVAKVC TYTYKPMVGM
TSETDANGKT IYYEYDVLGR LIVVRDQDGN ILKQMEYQYQ VPITK
|
|---|
| |