| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6568 |
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| Symbol | |
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| ID | 8362753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 8239681 |
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| End bp | 8240298 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644968697 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003126173 |
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| Protein GI | 256425520 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.307355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAAGGGTT TTCGACTACT TTTAACATGC AGAGAAAAAA TATCAACCAA AGTAGTGCAG
ACACCTGACC ATGCCACCAT ACAAATACTC GCCGGAAGAA TAGCCACCGG AGATGAGCAG
GCTTACAGGC AACTATTCAG GCAATTTTAT AAGCCTTTAT GCCAGTTTGC TGCTTCTATC
GTGCGTTCTA ACGAACAGGC CGAGGAAATT GCTTCCGATG TTTTTATGAA CATCTGGAAG
AACAGGGAGC GCCTTTTACA GGTCAGCAAC CTGAAGGTGT ATTTGTATGT GGCAGCACGT
AATACTGCAC TCAACTATCT GAACCAGCAA CAGTTACAAC ATTTTAGTAT CGATGAATTG
TCTGTAGACC TGAGCGTTGC TGATAATACA CCTGAACAAC TGATGATTTC AGGCGAAATG
GCCCGGAAGA TGGCCGATGC GGTAAATAAC CTGCCACCGC GCTGTAAAAT GATTTATAAA
CTGATCCGTG AAGACGGTCT GAAGTACAAA GAAGTAGCAA GTATCCTGGA AATCTCTGTA
AATACTATCG ATGTACAGAT GGCCATTGCC TGCAAAAAGA TCAGTGAATC CCTCCGTTTA
TATTTACCCA AACGCTAA
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| Protein sequence | MKGFRLLLTC REKISTKVVQ TPDHATIQIL AGRIATGDEQ AYRQLFRQFY KPLCQFAASI
VRSNEQAEEI ASDVFMNIWK NRERLLQVSN LKVYLYVAAR NTALNYLNQQ QLQHFSIDEL
SVDLSVADNT PEQLMISGEM ARKMADAVNN LPPRCKMIYK LIREDGLKYK EVASILEISV
NTIDVQMAIA CKKISESLRL YLPKR
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