| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6307 |
|---|
| Symbol | |
|---|
| ID | 8362489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7946776 |
|---|
| End bp | 7947516 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644968434 |
|---|
| Product | DNA glycosylase/AP lyase, H2TH DNA-binding |
|---|
| Protein accession | YP_003125913 |
|---|
| Protein GI | 256425260 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.61997 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAG GTCCGTCCAT TGTTATACTA AGAGAAGAGG TGCTATCTTT CAGGGGAAAG
GAGGTCATTG ATGTGGCCGG ATATGCAAAG ATTGACCTTG AAAGACTCCG CAATAAAAAG
ATCATTGCCT TCAAAAGCTG GGGCAAACAC TTCCTGATCT GTTTTAAAGG ATTTACCGTG
AGGATCCATT TGCTGATGTT CGGCACCTAC CGGATCAATG AGAAAAAAAA CAGTAATCCT
ACCTTACATC TCCAATTTGC GAAAGGGGAA CTGAATTTCT ATACCTGTGC TGTCAGGATC
ATAGACGAAT CGCTGGATGA GGTCTATGAC TGGAGCGGCG ACGTCATGAA TGAAGCCTGG
GACCCCAAAA AAGCCATGGC AAAACTGAAA GAGGTACCTG AGATGCTGGT GGCTGACGCC
TTGCTGAACC AGGATATTTT TGCCGGTTCC GGTAATATCA TCAAAAATGA AGTTCTTTTC
CGTATCAGGG TGCACCCGGA GACCAAAGTC GGGGATCTGC CGCTAAAAAA GAAACGTGAG
CTGGTGAAAG AGGTGGTGAA TTATAGCTTT GACTTCCTGC ACTGGAAGAA GGAATATAAG
CTCAAAGAGC ACTGGCTGGC GCATACAAAG AAGATCTGTC CCCGCTGTCA TATTCCATTT
CAGAAAGCTT ATATAGGAAC CACGAAACGG CGTACTTTTT ATTGTACCAA TTGTCAGATC
CGATATTACG ATACTAAATA A
|
|---|
| Protein sequence | MPEGPSIVIL REEVLSFRGK EVIDVAGYAK IDLERLRNKK IIAFKSWGKH FLICFKGFTV
RIHLLMFGTY RINEKKNSNP TLHLQFAKGE LNFYTCAVRI IDESLDEVYD WSGDVMNEAW
DPKKAMAKLK EVPEMLVADA LLNQDIFAGS GNIIKNEVLF RIRVHPETKV GDLPLKKKRE
LVKEVVNYSF DFLHWKKEYK LKEHWLAHTK KICPRCHIPF QKAYIGTTKR RTFYCTNCQI
RYYDTK
|
|---|
| |