| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6296 |
|---|
| Symbol | |
|---|
| ID | 8362478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7932055 |
|---|
| End bp | 7934076 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968423 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003125902 |
|---|
| Protein GI | 256425249 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.312585 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.564635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAG CCCGGATCAA AGGTACGAGA AAACATCCCA CTGCCCGTAG TTTATCTGCG
GACAATCTCG CTATATTTTC ACTTCCCATC AGCGTATTGC TACAAAATAG TAATGCGGGT
GTACTCGTAA CCGATGGAAA TCACCGGGTT ATCTGGGTCA ATTCCGTCTT CGAACAGAAT
GCCGGTCAGG AGGCGATGCA CATCTTCGGT ATGTCCTACA CCGCTATTAT CCGCTATTTC
AGCCGGATGG TCGAACACGT GGAAGACTTT GAGCAAAAAA TGCGGGATCT CCGGCTGAAA
AAGAAACCTT ATTTCGGGTG GGAGATCATT CTTCGCGACG GACGCATATA TGAAGTCAGC
TACAATCCTT TAATAGAAAA ACGCCGTTTT ATGGGCAGCG TCTGGCAGAT TGTCGACGTT
TCCCGCCATA AAATGCCCCG TTCGCAACTG GACCTGGCCC GCCGGCAGGC AGAAGAAGCC
AGGGGCGCTC AGAAAGAATT CCTGGCCAGT ATGAGCCATG AAATCCGGAC CCCCCTGAAC
GTCATCGTCG GAATGACGCA CCTGCTGGAA GAAACAAATC TCGATCCCAA GCAACGGGAC
TATATTAATA TACTGAAACA CTCTTCAGGT ATCCTCATGG GCCTGATTTC CGATATCCTG
GACCTTTCCA AGATCGAAGC CGGTGAATTG CAGGTTAACC AGCGGGAGTT CAATCTCACC
GAACTGGTCC AGTCCCTCCG CCATACATTT GAACTGAAAA TAGGCCAGCG GCCGGTCAGT
ATTTCCGCAT CTATCGATCC GCAGCTGAAG ACCTGGCTGG TAGGAGATGA TATGCTGCTG
AACCAAATAC TTATGAACTT GTTAGGTAAT GCAGAGAAAT TCACACGGGA AGGTGAAATA
GCCATTAACG TGCAACTGGA TTCCTGGCAG GAAGATAAAT GTTGGGTGAC CTTTCAGGTA
TGCGATACCG GTATCGGCAT TCAGAAAGAT AAACTGGAAC TGATCTTCCA GAACTACAAA
CAGGCAGAAC AGGAGATCCG GGAAAATTAT GGTGGCACAG GATTGGGATT AGCCATATCC
AAACAGTTGG TTGAACTACA GGGCGGCAGC ATCGTTGTCG AAGAAGCCGA CGGCTTCAGC
ACCTGTTTTT CTTTTACACT GCCCTTTATT GATACCCGAA AACCCTTCGT TTCTAATGCA
AGGTCAGGAC ATATGAAAAG GCAACCCAAC TTTTCAGTAG CCAAAGTACT GGTGATCGAG
GATAACCCCA TGAACCTCCG GTATATTATC AGTCTGCTGG AAAAATATAA TATCCAGCAC
CAGCTCGCGA CCAACGGGCC GGATGCACTC TATTTTCTGG ATTCCCGTTT ATATGACCTG
ATTTTACTCG ATATTCGTAT TCCGGGTCTT AATGGTCTCG AACTGGCCGT AAAGATCAGA
CAGGACGAAT CTAAACCCAA CGTAGCCACG CCGCTCGTTG CGACCACCGC CCTGGCCATG
GAGAGTACTT TTACACAGGC CAGACAGGCA GGGATCACCG ATATTTTAAC GAAACCTTAT
ACACCAGACC AATTATTGCA GGTATTGAAT AAGTATCTGA ATGATGACGA AACAGAATTA
ATAATGGAAG AGCCTACAAA CATTTCCGGA TTTGAGTTCC ATAACGAGCT GGATGTAAAG
TACCTGAATA CTTTATACGA GAACAATATC TCTTACGCCG CCGACCTTTT TGAGATCTTT
CTCAAAACGA TCCTGGAAGA AGTGGTGAAG ATCAAAAAGC TGGTCGAAGA CCGCGACTGG
GAACAACTCA AATTCCAGGT ACATAAGCTG AAGCCTAACT TCGCTATGGT GGGCCTCACC
TGGATTACCA GTAAAATGCA GCAGCTGGAA AATACGCTGA ACACCAATGC GGCCACGCCG
CCGGAAGAGG TGGAAGCGGT ATTTGCAGGT ATCTCGCGCG ACCTGGACAA ATTCTATCCT
ATTATAGAAC AGGAGTACGA GCGGATGAAA CATATGCAGT AG
|
|---|
| Protein sequence | MAKARIKGTR KHPTARSLSA DNLAIFSLPI SVLLQNSNAG VLVTDGNHRV IWVNSVFEQN
AGQEAMHIFG MSYTAIIRYF SRMVEHVEDF EQKMRDLRLK KKPYFGWEII LRDGRIYEVS
YNPLIEKRRF MGSVWQIVDV SRHKMPRSQL DLARRQAEEA RGAQKEFLAS MSHEIRTPLN
VIVGMTHLLE ETNLDPKQRD YINILKHSSG ILMGLISDIL DLSKIEAGEL QVNQREFNLT
ELVQSLRHTF ELKIGQRPVS ISASIDPQLK TWLVGDDMLL NQILMNLLGN AEKFTREGEI
AINVQLDSWQ EDKCWVTFQV CDTGIGIQKD KLELIFQNYK QAEQEIRENY GGTGLGLAIS
KQLVELQGGS IVVEEADGFS TCFSFTLPFI DTRKPFVSNA RSGHMKRQPN FSVAKVLVIE
DNPMNLRYII SLLEKYNIQH QLATNGPDAL YFLDSRLYDL ILLDIRIPGL NGLELAVKIR
QDESKPNVAT PLVATTALAM ESTFTQARQA GITDILTKPY TPDQLLQVLN KYLNDDETEL
IMEEPTNISG FEFHNELDVK YLNTLYENNI SYAADLFEIF LKTILEEVVK IKKLVEDRDW
EQLKFQVHKL KPNFAMVGLT WITSKMQQLE NTLNTNAATP PEEVEAVFAG ISRDLDKFYP
IIEQEYERMK HMQ
|
|---|
| |