| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6259 |
|---|
| Symbol | |
|---|
| ID | 8362441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7887381 |
|---|
| End bp | 7888307 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968387 |
|---|
| Product | Peptidase M23 |
|---|
| Protein accession | YP_003125866 |
|---|
| Protein GI | 256425213 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.485379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.820011 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATTT ACGTATTGTT ATTACTCACA TTTGCCCTGG CCTTGCTCAG TATTTTCTTT
GTTTTCAGGG CCTCCGGGAG GGGGCTGCAG CATAGCTGGT CCGTATTGCT TTTAGGTTTA
TCCCTCGGCG TATTTATTTA TCTCTATGGA ACCTGGATTT ACCTTACTGT GGATGCCAAA
TGGGGTTTTG GCATCTGTTT ATTGCTAACC TTGCTGGGTG TCCTTTTCCG CAAAAAGAAA
GACAAACCGG CCCCCCGTAC CTGGCGATAT GTCGGCAATG TGTTCTTTTC AGCCCTTTTT
ATCACTTTAT CGATCCTTTA TTTTACCGGC ACCACCGGGA AGGCAAGGAC AATTGATCTG
GCATTTCCGC TGAAGACGGG TCGTTATTTT GTCTTACAGG GCGGTAAAGG ACTGCCGACG
AACCTGTTTC ATTTTAGTCT GCGTGGTGCG ATATACGCCA TGGATATCGT GAAATTAAAG
CCGGATGGTA GCAGGGCGAA TAAGATTTTC AGTCCGAAGC TGGAAGATTA TGAAATCTTT
GGCGATACCT TATACAGTCC GTGTGACGGC CGTATCGCAA AAGCGGTGGG AGACGACCCG
GACAATATTC CGCCGAATAT GGCCAGAGGT CCGCACAATA CCAACCAGGT GTTGATCGAA
ACGGAGAACA GCTATGTTTT CCTGGCGCAT CTGAAGCAGG GAAGTGTGAT TGTAAAAGAG
GGAGATATCG TAAAACAGGG AGATCCTTTG GGATGTGTGG GTAATTCGGG GTTCAGTTCA
GAGCCGCACC TGCATATACA GGCCCATGTG AAGGTACCGG GAGAGCCCTG GTTCCGTTCT
CCGCCAAGAT ATATTCATTT CAATGGCAGA GGCTATCTGT TGTATGAGGT GATCCGGCCA
CAGCGGGTGG AAATGGTAAA GAAGTAA
|
|---|
| Protein sequence | MFIYVLLLLT FALALLSIFF VFRASGRGLQ HSWSVLLLGL SLGVFIYLYG TWIYLTVDAK
WGFGICLLLT LLGVLFRKKK DKPAPRTWRY VGNVFFSALF ITLSILYFTG TTGKARTIDL
AFPLKTGRYF VLQGGKGLPT NLFHFSLRGA IYAMDIVKLK PDGSRANKIF SPKLEDYEIF
GDTLYSPCDG RIAKAVGDDP DNIPPNMARG PHNTNQVLIE TENSYVFLAH LKQGSVIVKE
GDIVKQGDPL GCVGNSGFSS EPHLHIQAHV KVPGEPWFRS PPRYIHFNGR GYLLYEVIRP
QRVEMVKK
|
|---|
| |