Gene Cpin_6249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6249 
Symbol 
ID8362431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7873821 
End bp7874174 
Gene Length354 bp 
Protein Length117 aa 
Translation table11 
GC content46% 
IMG OID644968377 
Productpreprotein translocase, YajC subunit 
Protein accessionYP_003125856 
Protein GI256425203 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1862] Preprotein translocase subunit YajC 
TIGRFAM ID[TIGR00739] preprotein translocase, YajC subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACACTA ACATGCTGAA CGTTCTACTG ATGGGTGGTG GTGCAGCTGG TGCTCAAGGT 
GGCGCTGGCT TCCAGTTTAT ATTTATCGGG GGTATGATCC TGGTAATGTG GTTATTCATG
ATCCGTCCTC AGACTAAGAA AGCAAAACTG CAAAAAGACT TTATCAGCAA TCTGCGCGAA
GGCGACAAAA TCGTTACTAT CGCAGGTATC CATGGCAAGG TTAAAAAGAT CAACGACAAT
AATACCCTCC AGATCGAGGT AAGCCCGGGT ACTTACTTTA CAGTTGAACG CTCTGCGATC
AGCATGGAGT ATACCTCTGC TCAGCAGAAA GCTGCCGAGA CACCTGCAAA ATAA
 
Protein sequence
MYTNMLNVLL MGGGAAGAQG GAGFQFIFIG GMILVMWLFM IRPQTKKAKL QKDFISNLRE 
GDKIVTIAGI HGKVKKINDN NTLQIEVSPG TYFTVERSAI SMEYTSAQQK AAETPAK