| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6229 |
|---|
| Symbol | |
|---|
| ID | 8362411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7851650 |
|---|
| End bp | 7852084 |
|---|
| Gene Length | 435 bp |
|---|
| Protein Length | 144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644968357 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_003125836 |
|---|
| Protein GI | 256425183 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.479788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAA TATGGCATTC TCTGGATATC TCCCTCGACC AGCTGAACGA ATATGGTAAT
AATACTTTGT CCGGCCACCT GGGCATGGAA TTCACAGAAA TCGGTCCTGA TTATCTGCGA
ATGATCATGC CGGTGAATAA TCAGACAAAG CAGCCATTCG GTCTTTTACA TGGCGGTGCA
TCTGCGGCGC TGGCGGAGAC GGTGGGTAGT GTGGCTTCTT CATTGATCAT TGATCCGAAG
AAACAGATCT GTGTGGGACT GGATATCAAT GCAAACCATC TCAAGGGGGT ATCTGAAGGG
TATGTACATG CGATCGCAAG ACCATTACAT ATCGGGTCAA CAACGCATGT ATGGGATATC
CGGATTTGTG ACGATGACAA TAAACTGGTA TGTATCAGCC GCTTAACGGT GGCTGTAAGA
GATAAAAAAG CTTAA
|
|---|
| Protein sequence | MKPIWHSLDI SLDQLNEYGN NTLSGHLGME FTEIGPDYLR MIMPVNNQTK QPFGLLHGGA
SAALAETVGS VASSLIIDPK KQICVGLDIN ANHLKGVSEG YVHAIARPLH IGSTTHVWDI
RICDDDNKLV CISRLTVAVR DKKA
|
|---|
| |