| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6210 |
|---|
| Symbol | |
|---|
| ID | 8362392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7834081 |
|---|
| End bp | 7835250 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644968338 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003125817 |
|---|
| Protein GI | 256425164 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGGA ATTACATTCT TTTAGACACG CCCGCCCGAG AGCTGTTATA TCCCTTCACG
CATACAAGAC CGGTGGCAGC CTGCCGTATA GGTATTCTGA CGATCCGCGA GAAATGGGAG
CATTGGCTGA ATACCGCTAT CAGTCACTTC ACCGTCCCTT ATTTACAACA AAAATACCCG
CTTAAAAGAG ATGAGACCAT GCCGGCAGTC CTGATTGCAG GAAATGTGCT GCCAGATAAG
GCATTGGTAC AGGCTATTGC TGCATTGCAG CCTGGTCAGG GACTTTATAA GTCGGATGAA
TTCATTGCTA AGGTGATGCC GGGAGATCAA CCTGATGCAG CACCTATAGA ACGAAAAGAG
TATCTTGGCG AAATATCGGC GGTGAGGAGG CCCTGGGATT TCTTTTTGTT GAATGATAAG
GCGCTTCGCA GTGATTTTGA CCTGCTGACT GCCGGAAGGG TATCGGCGCC TCTCAGTGAT
ACGAATAAGG TGAGTGGTGC GGAGCAGATC TTCCTGGAGG AGGGGGCGGT GGTAGAGCAC
AGTATCCTGA ATGCGCTGAC CGGACCTATT TATATCGGAA GGAATGCGGA GGTTATGGAA
GGTTGTCTGG TAAGAGGGCC GCTGGCGATG GGAGAGAAGG CGGTGCTGAA AATGGGCACT
AAGGTATATG GGGCGACGAC GCTGGGACCT GGCAGTGTAG GAGGGGGAGA GATCAAGAAT
GTGATAATGT TCGGTTATTC TAATAAAGGG CATGACGGTT ACCTGGGAGA TGCGGTGATC
GGGGAATGGT GTAACCTGGG TGCTAATGCG ACCTGTTCTA ATCTGAAGAA CAATGGGAGT
GTGGTAAGAG TCTGGGTGGA GGCTTTGCAG CAGGCGGAGC CGGCAGGTAA CAAATGTGGA
TTGCTGATGG GAGATTACAG CCGTTGTGGC ATTGGTACGA TGCTGAATAC GGGTACGGTG
ATCGGCGCCT CCTGTAATAT ATTCGGGGGC GATTTTCCGC CTAAATTTGT GCCTTCCTTT
TCATGGGGTG GCGCGGGGAA AACAGAACGT TACCGTATTG CGCAGGCTTT ACGCGATATC
GAGACCTGGA TGCGCTTTAA AGGGCAGGAG ATGACGGAGA CAGACAAACA GGTACTGGAA
GTTTTGTTTG CAAAGCTTTC AGATGATTAA
|
|---|
| Protein sequence | MKRNYILLDT PARELLYPFT HTRPVAACRI GILTIREKWE HWLNTAISHF TVPYLQQKYP
LKRDETMPAV LIAGNVLPDK ALVQAIAALQ PGQGLYKSDE FIAKVMPGDQ PDAAPIERKE
YLGEISAVRR PWDFFLLNDK ALRSDFDLLT AGRVSAPLSD TNKVSGAEQI FLEEGAVVEH
SILNALTGPI YIGRNAEVME GCLVRGPLAM GEKAVLKMGT KVYGATTLGP GSVGGGEIKN
VIMFGYSNKG HDGYLGDAVI GEWCNLGANA TCSNLKNNGS VVRVWVEALQ QAEPAGNKCG
LLMGDYSRCG IGTMLNTGTV IGASCNIFGG DFPPKFVPSF SWGGAGKTER YRIAQALRDI
ETWMRFKGQE MTETDKQVLE VLFAKLSDD
|
|---|
| |