Gene Cpin_5876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5876 
Symbol 
ID8362056 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7468919 
End bp7469257 
Gene Length339 bp 
Protein Length112 aa 
Translation table11 
GC content45% 
IMG OID644968014 
Producttranscriptional regulator, HxlR family 
Protein accessionYP_003125495 
Protein GI256424842 
COG category[K] Transcription 
COG ID[COG1733] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.1561 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.496551 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGAGA TAGGCAGTAC AGAGTTTCAA TGTCCCTCAG ATGTCTTTTT GCAGATCATT 
AAAGGGAAGT GTAAAACCAC CCTGATCGTC CTGATCAAAA AAGGCAGAAA CAGGTTTGGA
GAAATGCGCA GGACATTACC CACTATCAGT GAGCGGATGT TATCAAGACA ACTGGACGAA
CTGGAAAAAG ACGGAATCAT CCGCCGGGAG AGTTTTCCGG AAGTGCCGCC CCGGGTAGAA
TACTTTCTGA CGCCTTATGG AGAGACGATT TATCCGATTA TCCGGGAGAT GCGCAAATGG
GGATATATCC ACCTTGAAAA GCAACAATCT GATGTATAA
 
Protein sequence
MEEIGSTEFQ CPSDVFLQII KGKCKTTLIV LIKKGRNRFG EMRRTLPTIS ERMLSRQLDE 
LEKDGIIRRE SFPEVPPRVE YFLTPYGETI YPIIREMRKW GYIHLEKQQS DV