Gene Cpin_5547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5547 
Symbol 
ID8361724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7078858 
End bp7079331 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content48% 
IMG OID644967691 
Product3-demethylubiquinone-9 3-methyltransferase 
Protein accessionYP_003125175 
Protein GI256424522 
COG category[S] Function unknown 
COG ID[COG3865] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.388463 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAGA TCACTCCTTT CTTGTGGTAC AATGATCAGG CGGAAGAGGC AGCAGAACTA 
TACACCTCTT TATTTAAAAA TTCCTCCATC GGAAAGATCA GCCGTTATCC ACCAGGTGTT
CCCGGCCAGG AAGGAAAGGT AATGACGGTG GAATTTACAC TGGATGGACA GGAGTTCATC
GCCCTGAATG GCGGTCCGCA CTATTCCTTT ACACCAGCCG TATCGATGTT CATTAAATGT
GAGACACAGG AGGAAGTAGA TAAACTATGG GACGCATTAA CAGCTGGCGG CAGTATAGAT
AAATGCGGCT GGTGCAGGGA TAAATTCGGA CTGTCCTGGC AGGTGGTGCC TAAAGGCCTG
CAGGAACTGT TACAGGATAA AGATCCGGGC AGAGCACAAC GTGCGACAAT GGCGATGATG
CAGATGGAGA AACTTGATAT CGGCATGTTG GAAGAGGCTG CCAATGGCAA TTGA
 
Protein sequence
MQKITPFLWY NDQAEEAAEL YTSLFKNSSI GKISRYPPGV PGQEGKVMTV EFTLDGQEFI 
ALNGGPHYSF TPAVSMFIKC ETQEEVDKLW DALTAGGSID KCGWCRDKFG LSWQVVPKGL
QELLQDKDPG RAQRATMAMM QMEKLDIGML EEAANGN