| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5492 |
|---|
| Symbol | |
|---|
| ID | 8361669 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7004392 |
|---|
| End bp | 7005481 |
|---|
| Gene Length | 1090 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967638 |
|---|
| Product | peptide chain release factor 2 |
|---|
| Protein accession | YP_003125122 |
|---|
| Protein GI | 256424469 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1186] Protein chain release factor B |
|---|
| TIGRFAM ID | [TIGR00020] peptide chain release factor 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0496262 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAG AACAACTCAA AGCTATGAGG GACCGTCTCC ATGTCCTGGG AGGTTTTCTT
TGACGTCCAG GACCGCATAG CTAAAATCGA AAATGACAAA CAATTAACGT TAGCCCCAGG
GTTCTGGGAC GACAACGCCA GGGCTACGTC AATTCTCAAA GAGATTAAAG TGAATAAGTT
TTGGGTTGAC CTTTATGAGA ACGTGCAAAC GTCAATAGAG GACAGCGCAG TCCTGCTCGA
CTTCCAGAAA GAAGGTGAAG CCTCCGAAGA GGAAGTTGCA CAGGCCTACC ATGCTGCCAC
TGAAGCGCTC GATGAGCTAG AATTTAAATC AACACTGAAC GAACCGGAAG ACGAAATGCC
GGCAGTGCTC ACCATCAACT CCGGCGCCGG TGGCACCGAG AGCCAGGATT GGGCAGAGAT
GCTGTTGCGT ATGTATCGTA TGTATGGGGA AAAGCAGGGT TGGAAAGTAT CCGAAATTGA
TGTGCAATAC GGGGATGGCG CTGGTATTAA ATCGGCTTCC CTGGAAATGG ATGGCAGTTT
CGCCTATGGA TTGCTGAAAG CAGAAAGTGG AGTACACCGT CTGGTACGTA TTTCTCCGTT
TGATGCCAAT GCCCGCAGGC ATACTTCCTT CGCTTCCATA TTTGTGTATC CGCTGGTGGA
TGATACCATT GAAATCGCTG TCAATCCTGC CGACCTGGTA TGGGAATTCT ACCGTTCAGG
TGGTAAAGGT GGACAGAACG TAAACAAGGT AGAAACCGCA GTGCGTTTAA AGCACGTTCC
TTCCGGCATT ATCATAGAAT GTCAACAGGC ACGTACGCAG GGTGAGAACC GTGAAAAGGC
GCTCACAATG CTGAAATCCC GGTTGTATGA AGAAGAACTG CGTAAACGTG AGGAACTTAA
AAATGCCGCC AACGCAAACA AGCGCAAGAT CGAGTGGGGC TCACAGATCC GTTCCTATGT
ATTCCATCCT TACAAAATGA TCAAAGATCA CCGTACGGAT TATGAAGTAG GTAACGTACA
GCCTGTTATG GACGGCGAAC TGGAGGGTTT CATCAAGGCT TACCTGATGA TGTCCAAAGG
AGAAGAATAA
|
|---|
| Protein sequence | MTAEQLKAMR DRLHVLGGFL DVQDRIAKIE NDKQLTLAPG FWDDNARATS ILKEIKVNKF
WVDLYENVQT SIEDSAVLLD FQKEGEASEE EVAQAYHAAT EALDELEFKS TLNEPEDEMP
AVLTINSGAG GTESQDWAEM LLRMYRMYGE KQGWKVSEID VQYGDGAGIK SASLEMDGSF
AYGLLKAESG VHRLVRISPF DANARRHTSF ASIFVYPLVD DTIEIAVNPA DLVWEFYRSG
GKGGQNVNKV ETAVRLKHVP SGIIIECQQA RTQGENREKA LTMLKSRLYE EELRKREELK
NAANANKRKI EWGSQIRSYV FHPYKMIKDH RTDYEVGNVQ PVMDGELEGF IKAYLMMSKG
EE
|
|---|
| |