| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5410 |
|---|
| Symbol | |
|---|
| ID | 8361587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6916038 |
|---|
| End bp | 6917984 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967556 |
|---|
| Product | alpha-glucosidase, putative |
|---|
| Protein accession | YP_003125040 |
|---|
| Protein GI | 256424387 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0179561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0688693 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACA AAGGCCTGTC TGTAACAGGA ATTTTCCTTT TCTGCCTTTC CGGCATCCAC
GCTCAACAGC GATATACAGT AGTATCACCC GATAAAACGG TCACGTTGAC CATCCAGGTA
GGCGCCGATA TTACCTACAG TCTCTCTCAG GATAACAAGG AACTGATCTC CCCGTCTGTC
GTATCGTTTA AAACCGATGC GGACAAAGGA AACGCATGGA AAGTCAGTAA AGCCAAAACG
GGGGCGCATG ACGGCGTACT GACGCCTGTC ATTATGCAGA AAACCAAAAC AATCGCTGAC
AGGTACAATG AGTTGCACCT GGATTTCAGC AACGGACTCG CACTTGAATG GAGAGCGTAT
GATAATGGTA TCGCCTGGCA TTGGCTGACG ACCAGCAAAA AGCCATACAA GGTGCTGGAC
GAGCAGGCAG GTTTCAGTCT GGACAAGGAG GGCAAGGCAT GGTACCCACA GGAGGACGCT
ATGTTCTCTC ATAATGAACG TAAATACATT CAATATAAAC TGGACAGTAT AGGGGAAAAA
CAGCTGGCCA GTCTGCCGGC TTTATTCGAA GTAAAAGGAA CCAAACTGCT GCTGACCGAG
TCCGGTCTGT TCAACTATGC CGGTATGTGG CTGCGTGGCC AGGGTGCTGG CAAATTAAAG
GCGGTATTCC CCTACTATCC CAAAGAGAAA AAGGTGACCA GCGACCGTGA TGAACAGGTT
ACTGCCCGCG AGAACTATAT CGCCAATATT CAGGGACCAC AATCTTTTCC CTGGAGACTG
GTGATGATTG CCCGTCAGGA TGGCGACCTG CTGAGCAATC AGCTGGTATA CCAGTTAGCC
CCTCCTGCGA CAGGTGATTA CAGTTGGGTA AAACCCGGTA AAGTACAGTG GGACTGGTGG
CATTACAACA ACATTTATGA CGTTGATTTT CGTGCCGGCA TCAACAATGA AACGTACAAA
TACTATATCG ACTTTGCCGC TAAATATGGT ATTGAGTATG TGCTGCTGGA CGAAGGCTGG
TGTGATACCC GCGATCTGAT GAAACTGACG CCAGGTATTG ATGTAAAAGA GCTGGTAGAC
TATGCTAAAG CAAAAAATGT CAATATCCTG CTCTGGAGCA GCTGGCTGGT TCTTGATAAA
CAACTGGACA TGGCCCTGGA TAAGTTCAGA GAATGGGGTG TTAAAGGCAT CAAAGTTGAC
TTTATGCAGC GGGATGATCA GGATATGGTC AATTACTATG AAAAAGTCTC TAAAGCTGCC
GCTGCGCGTC AGCTGATGGT CGATTTCCAT GGCGCCTACA AGCCGACCGG CTGGCTACGC
ACCTACCCTA ACGTACTGAC GTCTGAAGGT GTTTTAGGAA ATGAGATCAG TAAGTTTGAA
GACTGGATCA CCCCTTCTCA TACTACGACT ATTCCGTTCA TCCGTATGGC TGCTGGTCCG
ATGGACTTCA CACCCGGCGG TATGCAGAAC GTACAGCGCG ACAGCTGGTC TGCTATTCCT
GCAGAACCAC TGACATTAGG CACCCGTTCT AATCAGCTGG CGATGTATGT GGTGTATGAA
AGTCCGCTAC AGATGCTCTG CGACCTGCCG ACGCACTATT ACCATGAACC CGTGGCCATG
GATTTCCTGC AGACAGTCCC TACTGTTTGG CAGCAGACCA TTCCTTTACA GGCAAAAGTG
GGTGAATATG TAGCGATTGC CAGACAAGCG CCAAACGGCG ACTGGTATAT CGGTGCGATG
ACCAACTGGA CGCCAAGGGA ACTGACATTG GATCTTTCTT TCCTGGGTGA AGGCAGCTTC
AAAATAGACA GCTGGAAAGA TGGTATTAAT GCTGACAGAA ATGCGAAGGA TTGTAAACGC
GAGTCGGGTA CGACTGACAG TCACTCGAAA CTCACGATCA AAATGACAAA AGGCGGTGGG
TATGTAGCCA GGATCCGCAA ACAATAA
|
|---|
| Protein sequence | MKYKGLSVTG IFLFCLSGIH AQQRYTVVSP DKTVTLTIQV GADITYSLSQ DNKELISPSV
VSFKTDADKG NAWKVSKAKT GAHDGVLTPV IMQKTKTIAD RYNELHLDFS NGLALEWRAY
DNGIAWHWLT TSKKPYKVLD EQAGFSLDKE GKAWYPQEDA MFSHNERKYI QYKLDSIGEK
QLASLPALFE VKGTKLLLTE SGLFNYAGMW LRGQGAGKLK AVFPYYPKEK KVTSDRDEQV
TARENYIANI QGPQSFPWRL VMIARQDGDL LSNQLVYQLA PPATGDYSWV KPGKVQWDWW
HYNNIYDVDF RAGINNETYK YYIDFAAKYG IEYVLLDEGW CDTRDLMKLT PGIDVKELVD
YAKAKNVNIL LWSSWLVLDK QLDMALDKFR EWGVKGIKVD FMQRDDQDMV NYYEKVSKAA
AARQLMVDFH GAYKPTGWLR TYPNVLTSEG VLGNEISKFE DWITPSHTTT IPFIRMAAGP
MDFTPGGMQN VQRDSWSAIP AEPLTLGTRS NQLAMYVVYE SPLQMLCDLP THYYHEPVAM
DFLQTVPTVW QQTIPLQAKV GEYVAIARQA PNGDWYIGAM TNWTPRELTL DLSFLGEGSF
KIDSWKDGIN ADRNAKDCKR ESGTTDSHSK LTIKMTKGGG YVARIRKQ
|
|---|
| |