| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5360 |
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| Symbol | |
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| ID | 8361537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6845748 |
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| End bp | 6848921 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967508 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003124992 |
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| Protein GI | 256424339 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATA AATTTATACA GAGGCCGGTC CTCTCAATAG TAATATCGCT CATTATCGTG
TTCCTGGGTG TGATCTCCAT CACCTCGTTA CCGGTAACGC AATTCCCGTC CATCTCCCCT
CCCAAGGTGA ATGTGACCTG TGAATACCCG GGTGCAAACG GTGAGCTGAT GATCAAATCC
GTAATCATTC CGCTGGAAAG AGCCATTAAC GGTGTTCCCG GCATGAAATA CATGACCTCC
GACGCAGGTA ACGACGGTGA GGCCACCTTA CAGGTCGTAT TCAACCTAGG TACTGATCCT
AACCAGGCTT CCCTGAACGT ACAGAACCGT GTGGCTTCCG TGGTAAACAA ACTCCCGCCA
CTGGTAGTAC GTGAAGGTGT GAAGGTATCC CGTGTGGAAT CCAGCATGTT GATGTACGTG
AACCTGTACA GTGAAGATCC GAATGCCGAT CAGAAATTCC TCTTCAACTT CGCCGACATT
AACCTGTTGC CGGAATTAAG AAGGGTTGAC GGTGTAGGTT TCGTGGACAT CCTTGGTAAC
AGGGAATACG CCATGCGTAT CTGGCTGAAG CCTGACCGTA TGCTGGCTTA CAAGATCTCT
GCGGATGAAG TGATGAAATC ACTGGCTGAA CAGAGTCTGG AAGCCTCTCC TGGTAAAACC
GGTGAGAGCT CCGGTAGAAG ATCTCAGTCT TTTGAATATG TACTGAAATA CTCCGGAAGG
TTTAACTCTA AAGAGCAGTA CGAAAACGTA ATCCTGCGCT CTAATCCGAA TGGTGAAATT
CTTCGCCTGA AAGATGTGGC AGAGATTGAG TTCGGAAGCT CCATGTACGA TATCTATTCC
AACCTGAATG GTAAACCATC CGCAGCGATC GTACTGAAAC AGTCTTACGG TAGTAATGCG
AGCCAGGTAA TTAAAGACGT TAAAGCGAAA CTGAAAGAGA TCAAGGGCAA CTCCTTCCCG
AAAGGAATGA ACTATGAGAT CAGCTATGAC GTATCTAAAT TCCTGGATGC CTCTATCGAA
AAAGTGATCC ACACCCTCGT GGAAGCATTC GTACTGGTTG GTATAGTGGT GTTCCTCTTC
CTGGGTGACT GGCGTTCTAC CCTGATCCCG GCAATGGCGG TACCCGTATC CCTGATTGGT
ACGTTCGTAT TCATGCAGTT CTTTGGTATC ACCCTCAACC TGATCACCCT CTTCGCCCTC
GTATTGGCGA TCGGTGTCGT GGTGGATGAC GCCATCGTGG TAATTGAGGC CGTCCATGCC
AAAATGGAGG AAGAACATCT CTCTCCGCTG AAGGCTACCA AAAAGGCCAT GCATGAAATT
GCGGGTGCGA TCATTGCGAT CACCTTCCTG ATGTCTGCGG TGTTTGTACC GGTGGCGTTC
ATGTCAGGTC CGGTAGGTAT CTTCTATCGC CAGTTCTCCA TCACAATGGC AACTGCAATC
ATCCTCTCCG GTGTGGTAGC ATTGACGTTG ACGCCTGCGC TTTGTGCGAT GATCCTGAAA
AACAATCATG GTAAAAAGAA GAAATTATCT CCTGTAGATA AATTCCTGGC GGCGTTCAAC
AGGGGCTTTG ATAAAACGCA GGGCCGCTAT ATGCGGATCC TGAAGTCCAT TATCAACAGA
CGTCTGGTAA CATTCGCCAT GCTGGCCGGC TTCTGTGCCG CTACCTGGTA TCTGAACGGA
CACGTGCCTT CCGGCTTCAT TCCGAATGAA GACCAGGGTA TGTTGTACGG TATCATTCAG
ACACCTCCGG GATCTTCCCT GGAAAGAACC AATCAGGTAG CAGAGAAACT GCAGAAAATA
TGCGAAGAGA TCGATGGTGT ACAATCCGTA TCTGCCCTTG CTGGTTATGA GATCCTGACG
GAAGGTACCG GTTCCAACTC AGGCACCTGT CTGATCAACC TGAAAAGCTG GGAAGAACGT
AAACACTCCG TACAGGAAAT CATTGAGGAA CTGGAAGAGA AATGTAAAGA CATCACCGGC
GCGAATATCG AATTCTTCCA GCCACCAGCC GTACCGGGTT ATGGTGCAGC GGGCGGTTTC
GAATTACGTC TGCTGGATAA AGGAGGTTCC GGCGACTATA AGAAAATGGA AACTGTCAGC
AATGATTTTG TAGCAGAACT GAGCAAACAC AAAGAGCTGG CATCTGTATT CAGCTTCTAC
TCTGCCAGCT TCCCGCAATA CATGCTGAAA ATTGACAATG ATATCGCACA GCAAAAAGGC
GTAAGCATTG ACAATGCCAT GAATACCCTC TCTACATTGA TAGGTAGTAA CTACGAGATC
AGCTTCATCA AATTTGACCG TCCTTATAAA GTGATCATTC AGGCTTCTCC GCAATACCGC
GCACTGCCTG AGGATATCCT GAAACTGTAT GTAAAGAATG ACCGCGACGA AATGGTGCCT
TTCTCTGCAT TTATGAAGAT GGAAAAAGTA TATGGTCTGT CTGAGATCAC CCGCTACAAC
ATGTACAATT CTTCCCAGAT CAGTGGTTCC GCCGCTCCGG GATACAGTAG TGGTCAGGCG
ATCCAGGTAA TTGACGAAGT AGCGAAGAAA ACACTGCCAA GAGGTTTTGG TATCGACTGG
GCAGGTATCT CTAAAGATGA GGTGGCGCAG GGTAACCAGG CGATCTATAT CTTCCTCATC
TGTCTCGGAT TCGTGTACCT GATCCTGGCC GCACAGTATG AGAGCTTCAT TCTGCCATTC
GCAGTAATCC TCTCCCTGCC AGCGGGTATC TGTGGTGCAT TCTTCCTGCT GACTGTACTA
GGACTGGAAA ACAACATCTA CGCACAGGTA GCCATGGTAA TGTTGATCGG TCTCTTAGGT
AAGAACGCCG TACTGATCGT GGAATTTGCC GTGCAGAAAC ACCGTTCCGG CTCCACCGTA
TTGGCGGCTG CTATGGAAGG TTCCAAAGTA AGGTTCCGTC CGATCCTGAT GACCTCTTTC
GCATTCATCG CGGGTCTGAT CCCACTGGTG ATCGCTACTG GTCCTGGTAA GATCGGTAAC
CGTACCATTG GTACAGCTGC TGCAGGCGGT ATGTTATTCG GTACCATCTT CGGGGTACTG
ATCATACCCG GATTATATTA CATATTCGGC AAGATTGCGG AAAAACGCAT GCTTGTGAAA
GAAGAAGAAG AAAATCCATT AACCGAGGAA ATCGATCATA ATGTATATGT ATAA
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| Protein sequence | MFNKFIQRPV LSIVISLIIV FLGVISITSL PVTQFPSISP PKVNVTCEYP GANGELMIKS
VIIPLERAIN GVPGMKYMTS DAGNDGEATL QVVFNLGTDP NQASLNVQNR VASVVNKLPP
LVVREGVKVS RVESSMLMYV NLYSEDPNAD QKFLFNFADI NLLPELRRVD GVGFVDILGN
REYAMRIWLK PDRMLAYKIS ADEVMKSLAE QSLEASPGKT GESSGRRSQS FEYVLKYSGR
FNSKEQYENV ILRSNPNGEI LRLKDVAEIE FGSSMYDIYS NLNGKPSAAI VLKQSYGSNA
SQVIKDVKAK LKEIKGNSFP KGMNYEISYD VSKFLDASIE KVIHTLVEAF VLVGIVVFLF
LGDWRSTLIP AMAVPVSLIG TFVFMQFFGI TLNLITLFAL VLAIGVVVDD AIVVIEAVHA
KMEEEHLSPL KATKKAMHEI AGAIIAITFL MSAVFVPVAF MSGPVGIFYR QFSITMATAI
ILSGVVALTL TPALCAMILK NNHGKKKKLS PVDKFLAAFN RGFDKTQGRY MRILKSIINR
RLVTFAMLAG FCAATWYLNG HVPSGFIPNE DQGMLYGIIQ TPPGSSLERT NQVAEKLQKI
CEEIDGVQSV SALAGYEILT EGTGSNSGTC LINLKSWEER KHSVQEIIEE LEEKCKDITG
ANIEFFQPPA VPGYGAAGGF ELRLLDKGGS GDYKKMETVS NDFVAELSKH KELASVFSFY
SASFPQYMLK IDNDIAQQKG VSIDNAMNTL STLIGSNYEI SFIKFDRPYK VIIQASPQYR
ALPEDILKLY VKNDRDEMVP FSAFMKMEKV YGLSEITRYN MYNSSQISGS AAPGYSSGQA
IQVIDEVAKK TLPRGFGIDW AGISKDEVAQ GNQAIYIFLI CLGFVYLILA AQYESFILPF
AVILSLPAGI CGAFFLLTVL GLENNIYAQV AMVMLIGLLG KNAVLIVEFA VQKHRSGSTV
LAAAMEGSKV RFRPILMTSF AFIAGLIPLV IATGPGKIGN RTIGTAAAGG MLFGTIFGVL
IIPGLYYIFG KIAEKRMLVK EEEENPLTEE IDHNVYV
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