| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5352 |
|---|
| Symbol | |
|---|
| ID | 8361529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6838837 |
|---|
| End bp | 6839685 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644967500 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003124984 |
|---|
| Protein GI | 256424331 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.20713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.334528 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAGG AATTTGAGGA AAAACCAACG CTGGCAAAAT TTGTCATGCA CATTGGTAAC
GAGCAATTCA AAGGCGCCGG CATGCGTAAC CCGCTACCGA AGCCTGTAAA TACTTTCGTT
TATAACAAAG GCGACGCTCA GCAGGTAATA ATAGATGAAA TTGAATACAC TATGCCAGCG
CAGGCTATCC TGCCGCTGGT ATCTAACCAG CATTTTCATT TTGAGCGTCC GGATGAACTG
ATTGCCTGGC AGTTTAACCG GGAGTTTTAC TGTATTGTCA ACCACGATGC AGAAGTTGGC
TGCGTCGGAT TTCTTTTCTA TGGTATCAGA CATCCAATGT TCATTCAGCT GGATGAATCA
ACAATAGCTG AGATGATCCA GATGCAGAAG AATTTTGCGG ATGAATGGCA GCACAGCGAT
AACTTTCGTG GTGAAATGCT CCGGATACTA CTGAAGCGTC TTATCATTAC AACTACCCGG
CTGGCTAAAT TGCAAAGTGA AAGTTATCAG CAATTCAGTG ATGAGAAAAT GGACATCGTC
CGCAAATTCG CGCTTCTATT AGAGATCAAT TATAAATCAG AACATGAGGT GAAGTTTTAT
GCAGCTGCTT TAAATAAATC CCCTAAAACC CTTTGTAATA TCTTTTCATT ACTACAGCAA
CCCTCCCCCT CCAAACTGAT ACAAAACCGG ATTATACTTG AGGCAAAACG TTATTTATAT
TATACAGACA AGTCGGGAAA AGAGATAGCT TACGAACTTG GTTTTGACAG CCCCGCGCAT
TTCAGCCGAT TTTTTAAGCT TTATTCAGGA TGTCGGATCT CTGATTTTAG AGCTGAAAAA
GCGCAATAA
|
|---|
| Protein sequence | MIKEFEEKPT LAKFVMHIGN EQFKGAGMRN PLPKPVNTFV YNKGDAQQVI IDEIEYTMPA
QAILPLVSNQ HFHFERPDEL IAWQFNREFY CIVNHDAEVG CVGFLFYGIR HPMFIQLDES
TIAEMIQMQK NFADEWQHSD NFRGEMLRIL LKRLIITTTR LAKLQSESYQ QFSDEKMDIV
RKFALLLEIN YKSEHEVKFY AAALNKSPKT LCNIFSLLQQ PSPSKLIQNR IILEAKRYLY
YTDKSGKEIA YELGFDSPAH FSRFFKLYSG CRISDFRAEK AQ
|
|---|
| |