| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5337 |
|---|
| Symbol | |
|---|
| ID | 8361514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6816985 |
|---|
| End bp | 6817533 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967485 |
|---|
| Product | Lipocalin family protein |
|---|
| Protein accession | YP_003124969 |
|---|
| Protein GI | 256424316 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3040] Bacterial lipocalin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.301955 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACGAA TCAATAAAGT CCATGTTGCC CTCCTCGCTG GTGCCGGTCT CCTGATGCTC
AGCACAGCGA CAGCGGTTAC CATTCCCAAA GGAGCCATTG CCGTAAGACC TTTCTACGTC
GATAAATTCC TGGGTAAATG GTATGAAATT GCCCGGATGG ACTACAAATA TGAACGTAAC
CTCAGCAACG TCACAGCCAC TTACAGTCTG CGGAAAGATG GGGCGATTAA AGTCGACAAC
CGTGGTTATG ATTACACAAG GGACAAGTGG AAGGAAAGTA TCGGTAAAGC AAAATTCGTC
AGAGAGGGAG ACCTTGGCCG GCTGAAAGTA TCGTTCTTTG GCCCCTTCTA TGCGGGTTAT
AACGTGATCG CCATCGATAG GGAGTATAAG TATGCCCTTG TTGCCGGTAA TAACCTTCAA
TATCTCTGGA TCCTGTCCAG GGAAACAACT ATCCCCGAGC ATGTAAAAGA TAATTATCTG
CTGAAGGCAC AGGAACTGGG GTATGATATT GACGCCCTGG TATGGTGTAC ACATGACCAG
GAAGCATAA
|
|---|
| Protein sequence | MVRINKVHVA LLAGAGLLML STATAVTIPK GAIAVRPFYV DKFLGKWYEI ARMDYKYERN
LSNVTATYSL RKDGAIKVDN RGYDYTRDKW KESIGKAKFV REGDLGRLKV SFFGPFYAGY
NVIAIDREYK YALVAGNNLQ YLWILSRETT IPEHVKDNYL LKAQELGYDI DALVWCTHDQ
EA
|
|---|
| |