Gene Cpin_5294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5294 
Symbol 
ID8361471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6741952 
End bp6742734 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content46% 
IMG OID644967442 
Productpolyketide biosynthesis enoyl-CoA hydratase 
Protein accessionYP_003124926 
Protein GI256424273 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.338177 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTATC AAACGATCTT ATTCAAACAG GAAGGGAATG TAGCATTCAT ACAGTTTTAT 
CGTCCGGAGG CAGGTAACAG TATCAATGAC CAGCTGATAG CCGAATTAAA CGAGGCGCTG
CAACGCTGTT ATACGGCTGC TACAGTAGTG GTGCTACAGG GCGATGCGGC AAACTTTTGT
ACAGGTGCAG ATTTCCAGGG CATCAACTCA TTATTGAAAG AGGGACAGGC CGTGAATGGT
CATGCTGCTT TGTTGTATGA TATATGGCGA ACAATTGCAG AAGGTCCTTT TGTAGTTGTG
GCTCATGTAA AGGGAAAAGC AAACGCCGGT GGCGTTGGTT TTGTTGCGGC AGCGGATATC
GTGATTGCGG ATACGACGGC CCGTTTTAGT TTGTCGGAAT TGCTATTCGG TCTGTTCCCC
GCTTGTGTGT TACCCTTCCT GGTAAGGAAG ATTGGATTTC AGAAGGCACA CTATCTGACA
CTGATGACAA AACCCATTAC AGCGGTTGAA GCATCTGACG CCGGACTGGC AGATGTCAGC
GGCGATAATA GTGATTTGTT ATTACAGCAG CATCTTGGGC GTTTACGTCT TCTCAATAAA
GCAGCTGTAA TGAAGTATAA ACAATACATG AATGATTTCC TGAAGATAAA CAGGGAGTGG
CAACCTTCGG CTATCAAGGC AAACACGGAT ATGTTTGCAG ATGCCGCTAA TCTGGGACGG
ATATCCCGGT TTGTTGAAAC AGGTTTGCTG CCCTGGCAGG AAAGTAACCC AATACATAAA
TAA
 
Protein sequence
MSYQTILFKQ EGNVAFIQFY RPEAGNSIND QLIAELNEAL QRCYTAATVV VLQGDAANFC 
TGADFQGINS LLKEGQAVNG HAALLYDIWR TIAEGPFVVV AHVKGKANAG GVGFVAAADI
VIADTTARFS LSELLFGLFP ACVLPFLVRK IGFQKAHYLT LMTKPITAVE ASDAGLADVS
GDNSDLLLQQ HLGRLRLLNK AAVMKYKQYM NDFLKINREW QPSAIKANTD MFADAANLGR
ISRFVETGLL PWQESNPIHK