Gene Cpin_5254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5254 
Symbol 
ID8361431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6651865 
End bp6652308 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content44% 
IMG OID644967402 
Producthypothetical protein 
Protein accessionYP_003124886 
Protein GI256424233 
COG category 
COG ID 
TIGRFAM ID[TIGR02241] conserved hypothetical phage tail region protein 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000600416 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAAATT ATCCATTACC CAAGTTTCAC TTCCAGGTAG AATGGGGTGG TAAAAACATC 
GGTTTTACTG AAGTAACCGG TCTTACTGTT GAAACAGAGG CGATCGAATA CCGCCATGGC
GCCAGTCCGG AATATCATAA GACCAAACAA CCAGGTCTGA AAAAATACAG CAATATCACG
CTGAAACGCG GCACATTCCA GTCAGACAAT GAATATTTTG ACTGGTGGGA AGAAACTGTA
TTCTTCCAGG AACAGAACGG TAAATACCGC AGAAACATCA CGATCAGTCT GCTGGATGAA
ATGCATAAAC CTATCATCGT TTGGAAGGTG AAGAATGCAT GGCCTATCAA GGTGCAGTCA
GCCGATCTGA AAGCAGACGC CAATGAGATC GCCGTTGAAA GTGTTGAGCT GGTACACGAA
GGCCTGGTGA TTGAAAACAA ATAA
 
Protein sequence
MANYPLPKFH FQVEWGGKNI GFTEVTGLTV ETEAIEYRHG ASPEYHKTKQ PGLKKYSNIT 
LKRGTFQSDN EYFDWWEETV FFQEQNGKYR RNITISLLDE MHKPIIVWKV KNAWPIKVQS
ADLKADANEI AVESVELVHE GLVIENK