Gene Cpin_5253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5253 
Symbol 
ID8361430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6651398 
End bp6651862 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content49% 
IMG OID644967401 
Producthypothetical protein 
Protein accessionYP_003124885 
Protein GI256424232 
COG category 
COG ID 
TIGRFAM ID[TIGR02241] conserved hypothetical phage tail region protein 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.00063173 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAGCCG CTAATTATCC TCCTGTAGGG TTCCATTTTA AAGTAGAGTT CCTATTCGAC 
AAAAAGGGCA CTGTCCAGCA AACGGACAAT GACATCCTTT TTCAGTCTGT ATCGGGACTC
AACTTTCAGA TGCAGACAGA CACCCTGCGG GAGGGAGGAG AGAACCGCTT TGAGCATGTC
CTGCCCCTGC GCAATAAGTG TACGGACCTG GTGCTGCGCC GTGGTATCTT CAAACCGGCG
GATTCCATCG TCTCACAATG GTGTCTTGAC GCTTTCAAAA ACTTCAGCTT CGCGCCCATT
GATCTCATTG TAACCCTGCT CAATGAACAG CACCAGCCGC TGATGACCTG GAAAGTGCAC
CGCGCCTGGC CAAAGAACTG GAAGGTGGCG GACTTCAATG CAGACAAAGG GGAAGTGGTG
ATTGAAACAT TTGAACTGAA TTATAACTAT TTCAGTGTGG AATAG
 
Protein sequence
MAAANYPPVG FHFKVEFLFD KKGTVQQTDN DILFQSVSGL NFQMQTDTLR EGGENRFEHV 
LPLRNKCTDL VLRRGIFKPA DSIVSQWCLD AFKNFSFAPI DLIVTLLNEQ HQPLMTWKVH
RAWPKNWKVA DFNADKGEVV IETFELNYNY FSVE