| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5250 |
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| Symbol | |
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| ID | 8361427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6648706 |
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| End bp | 6650496 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644967398 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_003124882 |
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| Protein GI | 256424229 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3500] Phage protein D |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00012293 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCAATG AGGAAAATAT AGCGACAGAC GAACGGATCA TCCCCACTCC CGGGGTCTAT
GATTATACCA GCTTTGAAGT GCTGATTAAC GGCAACAGGG TGAATAATCC GGCTTATCAT
CTGCGCTCGG TTTCCATTGT CAGGGAAGTG AACCTAATCC CTTATGCACG TCTCCAGTAC
CTTGACGGTG ACGTCGCCGA CGAAAAGTTT GCGGTGAGTG AAGCAGCTGA CTTCATTCCC
GGTAATAAGA TCGAACTGAA AGTAGGCCGC GATGGTAAAC AGACGACCGT GTTCAAGGGT
ATCATTGTCA AACATGGTAT CCGCGCAAGC GAGAGCGGTA ATGGCCTTCT GCAGCTGGAT
TGCCGCGATG AAGCGGTATC GCTGACCCTC GGCAGGAAAC ACAGATACTT CAGGGAGACA
AGCGACAGCG ATGCACTGAA AAAGGTGCTG GGCAATAAGG CAGGTGCGCT GGATAGTACG
CCCGTACAGC ATAAGGAACT GGTACAGTTT AATTGTACCG ACTGGGATTT TGCCCTCAGC
CGCGCTGAAA TGAACAGTTG CGTACTGATG GTGCAGGATG GAAAGGTCGA TATGAAGAAA
CCTGAACTGG CCGGATCTCC CACGCTGACA CTGGTATATG GCGCTACCAT CGACGAGTTT
GAAGCCGAGA TCGACGCCCG CACACAGTGG CAGGAAGTGA ATACCAGTGC CTGGAGCTAC
AAAGACCAGG CGGTACAACA GAATTCTACC ACCAGTGTGT CTTTTAAAGA AGCCGGCAAC
CTGTCAGGAA AAGAACTGGC GAAAGCCGTA TCTCCTGAGA AGCTGGAATT GCGGCACAGT
GGTCTGATCA GCGAACCCGA ACTGAAAGCC TGGGCGGAAT CTGTCATGCT GAAAAGCAGG
ATGGCCAAGA TACGCGGCCG GGTCAAGATC AAGGGATCTC CGGATACAAA ACCCGGGGAT
ACCGTTGAAC TCAAAGGATT GGGTAACCGC TTTAACGGAC TGGTATATGT GAGTGGTGTA
CGTCATGAAT ATGCGGAAGG TATCTGGACC ACACAAATGC AATTTGGTAT TTCTCCTGAA
TGGTTCCATC ATAAGGAAGA CCTGACAGAG ACGCCTGCGG CCGGTTTATT GCCCGCCGTA
CATGGATTGC AGATAGGCGT GGTAGTACAA CTGGAGAGCG ATCCTGACGG AGAAGACCGC
ATACTGGTGA AGATGCCGCT GACCGATAAC AACGACAAAG GCACCTGGGC CCGTATGGCT
TCACTGGATG CCGGTAAAGA ACGTGGTTAT TTCTTCCGTC CTGAAATAGG GGATGAGGTA
ATCGTAGGTT TTGTTAATGA TGATCCCCGC TTTGCCGTAG TACTGGGTAT GCTGCACAGC
AGTAAGAACC CCGCCCCTGT AAAGGCAGAG GATACCAATC ATATCAAGGG CCTGGTGACC
CGCAGTAAGA TGAAGACCAT GTATGATGAT GAGAACAAAG TGATGAAAAT GGAAACGCCT
GCAGGCAATT TCATTGAGCT GAGTGAAAAA GACAAGGCGA TCACGATCCA GGATCAGCAT
GGCAACGTCA TCAAAATGGA GTCAGCCGGT ATTACCATTA AAAGCGCAAA AGATATTAAG
ATGGAAGCGA CCGGTGCCTT CTCATTGAAA GCCGGTACTG ACATCAAGAT TGAAGGCATG
ACCATCTCCG GAAAAGCAAA CACCACACTG GAACTGAATG GTCAGGCGAA AGCAAAAGTA
GCCTCCTCCG CCATGCTGGA ATTGCAGGGC GGAATGGTAA AGATCAACTA A
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| Protein sequence | MANEENIATD ERIIPTPGVY DYTSFEVLIN GNRVNNPAYH LRSVSIVREV NLIPYARLQY
LDGDVADEKF AVSEAADFIP GNKIELKVGR DGKQTTVFKG IIVKHGIRAS ESGNGLLQLD
CRDEAVSLTL GRKHRYFRET SDSDALKKVL GNKAGALDST PVQHKELVQF NCTDWDFALS
RAEMNSCVLM VQDGKVDMKK PELAGSPTLT LVYGATIDEF EAEIDARTQW QEVNTSAWSY
KDQAVQQNST TSVSFKEAGN LSGKELAKAV SPEKLELRHS GLISEPELKA WAESVMLKSR
MAKIRGRVKI KGSPDTKPGD TVELKGLGNR FNGLVYVSGV RHEYAEGIWT TQMQFGISPE
WFHHKEDLTE TPAAGLLPAV HGLQIGVVVQ LESDPDGEDR ILVKMPLTDN NDKGTWARMA
SLDAGKERGY FFRPEIGDEV IVGFVNDDPR FAVVLGMLHS SKNPAPVKAE DTNHIKGLVT
RSKMKTMYDD ENKVMKMETP AGNFIELSEK DKAITIQDQH GNVIKMESAG ITIKSAKDIK
MEATGAFSLK AGTDIKIEGM TISGKANTTL ELNGQAKAKV ASSAMLELQG GMVKIN
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