Gene Cpin_5250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5250 
Symbol 
ID8361427 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6648706 
End bp6650496 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content50% 
IMG OID644967398 
ProductRhs element Vgr protein 
Protein accessionYP_003124882 
Protein GI256424229 
COG category[R] General function prediction only 
COG ID[COG3500] Phage protein D 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00012293 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCAATG AGGAAAATAT AGCGACAGAC GAACGGATCA TCCCCACTCC CGGGGTCTAT 
GATTATACCA GCTTTGAAGT GCTGATTAAC GGCAACAGGG TGAATAATCC GGCTTATCAT
CTGCGCTCGG TTTCCATTGT CAGGGAAGTG AACCTAATCC CTTATGCACG TCTCCAGTAC
CTTGACGGTG ACGTCGCCGA CGAAAAGTTT GCGGTGAGTG AAGCAGCTGA CTTCATTCCC
GGTAATAAGA TCGAACTGAA AGTAGGCCGC GATGGTAAAC AGACGACCGT GTTCAAGGGT
ATCATTGTCA AACATGGTAT CCGCGCAAGC GAGAGCGGTA ATGGCCTTCT GCAGCTGGAT
TGCCGCGATG AAGCGGTATC GCTGACCCTC GGCAGGAAAC ACAGATACTT CAGGGAGACA
AGCGACAGCG ATGCACTGAA AAAGGTGCTG GGCAATAAGG CAGGTGCGCT GGATAGTACG
CCCGTACAGC ATAAGGAACT GGTACAGTTT AATTGTACCG ACTGGGATTT TGCCCTCAGC
CGCGCTGAAA TGAACAGTTG CGTACTGATG GTGCAGGATG GAAAGGTCGA TATGAAGAAA
CCTGAACTGG CCGGATCTCC CACGCTGACA CTGGTATATG GCGCTACCAT CGACGAGTTT
GAAGCCGAGA TCGACGCCCG CACACAGTGG CAGGAAGTGA ATACCAGTGC CTGGAGCTAC
AAAGACCAGG CGGTACAACA GAATTCTACC ACCAGTGTGT CTTTTAAAGA AGCCGGCAAC
CTGTCAGGAA AAGAACTGGC GAAAGCCGTA TCTCCTGAGA AGCTGGAATT GCGGCACAGT
GGTCTGATCA GCGAACCCGA ACTGAAAGCC TGGGCGGAAT CTGTCATGCT GAAAAGCAGG
ATGGCCAAGA TACGCGGCCG GGTCAAGATC AAGGGATCTC CGGATACAAA ACCCGGGGAT
ACCGTTGAAC TCAAAGGATT GGGTAACCGC TTTAACGGAC TGGTATATGT GAGTGGTGTA
CGTCATGAAT ATGCGGAAGG TATCTGGACC ACACAAATGC AATTTGGTAT TTCTCCTGAA
TGGTTCCATC ATAAGGAAGA CCTGACAGAG ACGCCTGCGG CCGGTTTATT GCCCGCCGTA
CATGGATTGC AGATAGGCGT GGTAGTACAA CTGGAGAGCG ATCCTGACGG AGAAGACCGC
ATACTGGTGA AGATGCCGCT GACCGATAAC AACGACAAAG GCACCTGGGC CCGTATGGCT
TCACTGGATG CCGGTAAAGA ACGTGGTTAT TTCTTCCGTC CTGAAATAGG GGATGAGGTA
ATCGTAGGTT TTGTTAATGA TGATCCCCGC TTTGCCGTAG TACTGGGTAT GCTGCACAGC
AGTAAGAACC CCGCCCCTGT AAAGGCAGAG GATACCAATC ATATCAAGGG CCTGGTGACC
CGCAGTAAGA TGAAGACCAT GTATGATGAT GAGAACAAAG TGATGAAAAT GGAAACGCCT
GCAGGCAATT TCATTGAGCT GAGTGAAAAA GACAAGGCGA TCACGATCCA GGATCAGCAT
GGCAACGTCA TCAAAATGGA GTCAGCCGGT ATTACCATTA AAAGCGCAAA AGATATTAAG
ATGGAAGCGA CCGGTGCCTT CTCATTGAAA GCCGGTACTG ACATCAAGAT TGAAGGCATG
ACCATCTCCG GAAAAGCAAA CACCACACTG GAACTGAATG GTCAGGCGAA AGCAAAAGTA
GCCTCCTCCG CCATGCTGGA ATTGCAGGGC GGAATGGTAA AGATCAACTA A
 
Protein sequence
MANEENIATD ERIIPTPGVY DYTSFEVLIN GNRVNNPAYH LRSVSIVREV NLIPYARLQY 
LDGDVADEKF AVSEAADFIP GNKIELKVGR DGKQTTVFKG IIVKHGIRAS ESGNGLLQLD
CRDEAVSLTL GRKHRYFRET SDSDALKKVL GNKAGALDST PVQHKELVQF NCTDWDFALS
RAEMNSCVLM VQDGKVDMKK PELAGSPTLT LVYGATIDEF EAEIDARTQW QEVNTSAWSY
KDQAVQQNST TSVSFKEAGN LSGKELAKAV SPEKLELRHS GLISEPELKA WAESVMLKSR
MAKIRGRVKI KGSPDTKPGD TVELKGLGNR FNGLVYVSGV RHEYAEGIWT TQMQFGISPE
WFHHKEDLTE TPAAGLLPAV HGLQIGVVVQ LESDPDGEDR ILVKMPLTDN NDKGTWARMA
SLDAGKERGY FFRPEIGDEV IVGFVNDDPR FAVVLGMLHS SKNPAPVKAE DTNHIKGLVT
RSKMKTMYDD ENKVMKMETP AGNFIELSEK DKAITIQDQH GNVIKMESAG ITIKSAKDIK
MEATGAFSLK AGTDIKIEGM TISGKANTTL ELNGQAKAKV ASSAMLELQG GMVKIN