Gene Cpin_5245 details

Gene Information

• Locus tag: Cpin_5245
• ID: 8361422
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chitinophaga pinensis DSM 2588
• Kingdom: Bacteria
• Replicon accession: NC_013132
• Strand: -
• Start bp: 6635546
• End bp: 6642160
• Gene Length: 6615 bp
• Protein Length: 2204 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 644967393
• Product: hypothetical protein
• Protein accession: YP_003124877
• Protein GI: 256424224

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.291359
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.0000299325
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCCTGATC TAAAATATAT AACTACGGAT AAAAACAGCG GGTTCCCGGA GTACCTGGAC 
TTTGCCACGC TGCGCAAGCT GGGTATACAG CATGTTGCGG AGCTTTCAGG CAAGATATGG 
ACAGACCACA ACCTGCATGA TCCGGGCATC ACTATCCTTG AGGCACTGTG TTATGTGCTG 
ACAGACCTGG ACTACCGTAC CAAACTGGAT TTTAAAGACC TCATCGCCGC TCCTGCCGGT 
GCTGAAGGAG CAGACGATAA CTTCTATACA GCTGCAAAGA TACTTGGGAA TAATCCCCTG 
ACGATCGCAG ATATCCGCCG TATGCTGATT GATATCAAGG GGGTGCGTAA TGCCTGGCTG 
ATACCGATTA ACGAAGCGGA GACTGAAGCG GAATATTCGC TTGTATATGA TTGCGAAGCA 
GGAGTACTTG ACAACACGCG TCTTACGAAA GAGCAGTCTG CTGTTCCGCT GAAGGGACTA 
TACCGTGTGT ATATCGAACC GGATGATGTA TATGCGGCTG CTTACGAGAA AGACGCCTGC 
GGCAATGATG TATTCCCGAT GGATACTGTG CTGACAACGA TTGATCAGCG CTTACATGCA 
CACCGTAATC TCTGTGAAGA TTTTCCGGAT GTGGTTGTGC TGGAAAAGGA ACCCATCAGT 
TTGTGTCTGC ACATTGAACT GGCGGCTAAC TATGATCCGG ATGATGTGCT GCTGAACATT 
TACAGCCGCA TACAGGATTT CCTTTCCCCT GCGCCTGCCT TTTACAATCT GCAGCAATTG 
CTGGAGAAAG GCAGAACTAT GGAAGAGATA TTTGAAGGCC GTCCGTATGA CTTCAACAAG 
GATGAACCAT TACAACAGAA CGGTTTCATC GATGTTGCGG AACTGGAAAG CCTGGAACGG 
ATCACAGAAT TACATGCTTC CGATCTTTAC CGTATTATCA TGCAGGTGCC AGGTGTGGCA 
GGTATTACCC GTCTGATGAT GACCAGCTTT GATGAAGATG GTTATGCATT GACAGATGCA 
GCAGGTAATC CTGTTAAACA GGAAGGCGAG GAATGGTGCC TGCATCTGAA AAAAGATCAT 
CGTCCTGTTT TATCTCCCGA AACCTCAAAT GTTATTTTCT TCCGTAATAA GCTGCAATTT 
GGCGCGAACA CGGAAGTGGT GAATCAGCGT TACAAGAAAG CGATTTCTGA TTACAGTAAA 
TTCCCCAAGG CGCCTGCCGC ACTCGACACG ATTGTGCCAA AAGGACGCCA GCTGGACCTT 
GCACAGTATA CTTCTGTACA GTATGAGTTC CCAAAAGTAT ACATGATCGG TAAGAATGAT 
GTGCCGGGGG ATTCGACTGC TGCAAGGAAA GCACAGGCTT TGCAGTTACA GGCATACCTC 
TTGTTCTTCG ACAGGATGCT GGCGGATTAT TTCTCCCAGT TGTCTTCCGT ACGGAAACTG 
TTTTCCCTGC AATCATCTGC GGATGCACGT ACCTATTTCC CCGCTGATCT GAATGGTATT 
CCCCAGTTGC CTTCTTTGTT GCGCTATAAA AAGCAATTGC CCCGGACGAC TGCGGGTAAT 
ACTTACAATG GTATGCAGCT GGCGTATGAG CCTAATGACA GCGACAGCGG CAGAAAGGAA 
TACGATTCCA TGTATCTGCG CGATGAGATG ATACGCCGCA TTATCAGTGA GTGTAGTAAC 
AACAACGTAG CACGTAAAAT ATTACAGCGG GAAGATAACG CGTATTGGTT TTTCCAGCTG 
ACTGACAAAG CAGGCAAAGT CTTACTCGAA AGCACGATCT TCTTTGATAC AGCAATAGCG 
GCGGAACAGG CAGCGCTGGA TGTCATATTC CTCGCAGCAC TATCCGGCAG CTATGTAAAG 
AATAATAACC GGCAGGACGA TATATACAGT TTCGACCTGG TATACAATGA TGCGGGTGAT 
ACGGAGATGC TGACCGCATT GTATGAGACA TCTGAGCAGT ACCAGGAACG AAAAGAACGC 
TTTTTGAATC ATCTGCTGGC AAGGTTCTCC GAGGACTTTA CCGACTATGC GCTGATGATG 
TACAATATCA GCGGCAGGAA GAATGATCCT GCGCGCAATA TTGCGGATAA GGCGGCTTTT 
TTATCTGCTT ATCCTGAAAC CAGCGCCAAC CGCGCACTGG CATTTAATTA TAAGGATCCG 
GGTACCGGAT TTCCTGTCTG CGGACTGGAA AAGAGAGTGG CGGGTCTGAT GGGTATCCGT 
CAGTCACCTT CTGCTTCACT GAACAATTTT GATCTTGTTC ATGCAGAGAA ACGGACAGGT 
TTTGTCTGTA AGCTCCCCGA ACAGCTGACT CCTTTGTTCA TCAGTGATAG TCTGCATGAC 
AAAGCGCAGA TCGCAGCAAT CTTTAGTCAG TTCCGTGAAC TGGGTAAAAA TAAGGCTAAC 
TATAAACCTT ATGGCTGCAT TGGTGAAGGC GTGTATGGTT TTTCTATTCA ATCGCCTGTT 
ACTGCCAAAG AATGGATCTC TGCGAAATGC AGTATTGAAT ATACTACTGG GGAAGAAAGA 
GATACATTGA TTGACTGGTT CGTACATTTC TTTGAAGATG ACGGCCAGTA TAAAATTTAT 
CCGCAGACAC AGGAAGGATA TTATTTCCTG CTGCCTGATG ATTACGGTAA GACTTTATTA 
AAAAGCAAAC AGGGTTTTGA TACGGAGGAG CTGGCTTTGT CAAAAGGATA TGATTGCCTG 
GCTTTATTGC AGGAAGATGT AGTATGGGAC GTGGAACCTG ATGTTGCCGC CGGTAATTTC 
CGGATCATCA TCGTACAGCA GGATGTACAG ATTGCTTATC ATCCGCAGAC CTATGGTACG 
GAGGAAGCGG CTTTACAGAA GATAAAGGAG TTACAGGAAT ATTTCCGTCA GCATTACCTG 
GTGTATCAAC GTGAAGCGAG TGAATTGTAT AACTGGAGAA TGACCCATGA AGGGCAGGCC 
GCCTGGAAAG GTATTCTTCC TTATAAAGAC ATGGCGCAAT TGCCGGTAGC TTTTGTACAA 
TTCGTAGAAC TGGCTTCCAA AGCTGAAAAT TATCAGATCG TGCAAACAGG CGATGGCGTA 
TTTCGATTGC AGGTCGTACG TACGGAACAA GGGGAAGAAG AGGGAATGTC GTTTAGTACG 
GTCATTTCAG AACATCTGTC TTCTTTTGTG AACGGGGAAG CTGCACAACA GGTACAACAG 
ACCTACGTGA CCTTATTCAG TGGCTTGTGG CTGACTGTCA GCGGGGCGGT AACAGGTGTA 
TCTGCTGCGA CCTATTATTT CAGGGATCTG GATGCGCCAA AGGATGCAGG TGTGGTCTTG 
CTGACCACTG TACGTCCTGT ACCGGACGGC TCCACTGTTA CACAGGTGAC CCGTAGTATT 
ATCCGTTATG CTGCTAATCC AAAGAATGTT ACAATAAAGA CATTGGATAA CTGCCATTAC 
ATTGTGCAGG TGCAGGATGA CAATGGTGTG GTATTAGCAG CAAGCAGTGA GGTAGTTGAT 
CATGCAGCAG CAGCGAATCT GCTGGAACGT ATTCTGCTGA AGGCCGCACA GGACACACTA 
TGGGTAGAGA GAGGCGCAGC GATCGATGCC TATGGTCTCT ACTGGGAAGA TGCCAGCGCT 
GCAACACCTT TGCTGCAAAG CATTCATGTG TGGGAAACCC GGAAAAGCGC TGTTACGGCA 
TTTATGGAGT GGTTGCTCAA TGCAACTGCC GAAGATATCT GTCCTGAGCA ACAGGCCGCC 
AATGGATATG GTTATACCGT TTTCAGTAAA GATAAATCAC CTTTTGCCAG ACAGGCACAG 
TGGTATGCTT CCGCAGAAGA AAGAGATACC ACGATGCTGT TGCTGAAGCA ACAGTTAGCC 
GCTTTGCAGA GCAGTACCGG CTGGTCGGCG CTTACGCTGT ATCATTATTA TTTCAAGATC 
AGTGATAAGG AAGGACTGTT GTTGCAGGAG CCTCATTACT ATACCAGTTA TGATGCGGTG 
CGGACCGCAT TTTATGACAC CGTGAAGTAT GGCAGGCAGC GGCAATATTA CCTGCTCACC 
GTACAGGATA ACTGTACTTA CGGCTTTAAG ATTGTCGATG CTGATAAAAA TGTATTGGCG 
ATACATCCTT TCGAATATAC GACCACTGTA GAAAGAGATG CTGCTGTGGA GCGCACATTG 
CGTTTCCTGC AGACGCAAGG GCAGACAGTC AGCCAGGTGA AACTGGCGGG CGCCTGGAAG 
TATAGCTGGC AATGGCTGTC CTGCTGTTGC TGGTATCCGG AGACGGCACT GGAAGGACTG 
GATGAGAAGC CGGAGAAAGA AGACGCACAA AAGACACTGG TATATATCAT TGAGAAACTG 
GCGCCTGTAA AAGATAACTA TGATGTCGTA CAGGAAGAAA GCGGTTTCCG TGTGTTCCTG 
CGGGAAGGAA AAGAAAGAGT AGCCGTTCAT CCGCATTGGT ATGATTGTGC GAAAGAAGCG 
GAAGCAGCAA GAGATCGTCT TATTGCATGG TCTGGTTTCC ACCTGAGTAA AATAGAAGAA 
GGTAGTTATT CAGTAGAAAG AGACATCCGT ACAGATCTTT ATAAAAATGG CGAAACAGAG 
CAGGCATTGG GCTATCGCCT TTGGGACCGC GATTTCAGGA TCGCGCATTA TCTGCCGAAG 
TTTGAATCTG CTACAGATCG GGAAGATGCT TTAGCGGCGT TGTTACAACG ATATCAGCGT 
AGGTTGCCTG CATTTACTGC ATTGGAGAAA GGTTCTTCCG TTGTGGTGTC TGAGCATGGC 
GCATTCTATT ATCAGCTGCG TCGTAATGAC CTGTTGCTGT GGCAGAGTGT CACCGGATAT 
GGTTCTGCAG ATGCAGCAGC TGCCGCCTTT GAAAAGGAAT GCTGGGGACT GTTGCAACGC 
ACACTTAAAC AGGAGCATTA CAGTAACTGG ACCCCTGCCA CGACACAGCT GTATCTCAAT 
GATGATAAAG GGCAGGCGCT TGCTGCCGCA CCAATCACAC CAGGCAGCTA TGAAGCTTAT 
ATCGCAGCTG TTCAGGTAAG ACAACAGTTT GCCCGTAAAC ATGGTGTATT CCTGAATGAA 
GAAGGTACTT TCTCTTTTCA TATCTACAAT CCGAAAACGA ATAGCTACGA ATGGGAAAGC 
GTACATAGTT ATGCGAATCC TGTTGATGCT GAGCAGGCAT TACTGGAGTT CAGGCAGTTG 
TTACGCTTCC GTGGTAACTA TTGTTCGGAT GATGAAACCG TCGGCTGTTA TTATTCCATC 
AACCTGGGTA AGGTATTGCT GGACATACAG CAGGTAACCC GGAAATGTGA GGGTGATAAA 
GAGACGATGA CGGAAGCCGA TGCCTGGGAT CGTTTACAGG TATTCCTGGA CAATATTGAT 
CCTGATAACC GGAACTTATT CCCTTATACT GATTATGCGG TGGATTGCCG TTATGCATTC 
CGACTGGTAG ATGACAACAT TTATCGTGTG GCGCTGCACA CAGGATGGTA TCAGGGAATG 
GAGAGAAGGG AAGAGCACCG GATGGCGTTA CTGGCAGATA TTTATTGCAA GAAACATCTG 
TATGGCTGGT TTGTAAAACC AGAGAATCTG AATACAGATC CAAGGATACT GGATTGTTAT 
TTCCAACATC CGGAGAAACT GAATTTCGCG GATCTGTGGA TGAGTTATGG CCAGGTACCC 
GCGCTCAATC AGCTCTGGAC TATTGCTGAA GAGACACTAC CTGCTGTTAA TGCGAAACTT 
TACTATTACC AGCTTTACGG TAAAGTAGAT AAAGATACAA AAGTGATGTG GCGGGCAGTG 
ACCCGTTATA ATTCTGCAAC CTTGGCACAA GCAGCGGAAG CTCATTTTTA TGTATTCCTG 
CTGGAGATGG CCCGCTCGGC TGCTTCCTAC TACTATGAAC CAATGGCAGG TTGTGACAAT 
GCCTATACAC TGTATCTGAA AGATATGGAT GGTAAGGTCA TCGCTGTGGC ACCGGATGTG 
ATCTGTGGTG AGGATATAGA GAACGACCGT GCTACCCGGA TGTTCAACGC GATGTTATTC 
CCTATCGTGG AAACAGGCAA AGGATATACG TTCGAGATCA ATGATATCAA CCAGGTACAA 
GGCGATACCA TCAGCTATAC ATATGCTGCT GTATGGGAGT CTGTTCACAC ATATGATAAC 
CCGGAAGATG CCTGGGATGC ACTTACTACG GCCTGTGAAC TGTTGACAGA TCTGCGTAAT 
TATCAGCGTG GTGATGAAGA TGCCTGCGGA CCATTCAGTG TTACGCTGGT GAATCCGGAA 
GGCGTACAGG CAGAACATCC GTTGACTTAC ACCAGTATTT CCGCCAGAGA TGCGGCGATG 
GAGCATGTGT TGAATGCGAT CAGTGCTGAA GGTCTGCATC TGCTGGAACA TATACTGATG 
CGTCCGCGCA CGCAACAGCA ATCGTATGAG GCATGGCAGC TGGAACTCAA CTGGTATACG 
CAGCGCGAAT CTATGGTCAT ATTGCAGCTC ATTAATGAAG CGGTCTTTGC AGATGCAGCA 
AGCTATGTGA AAGCCTTGCA GGACGCGGCC GCTGCAAATG AAGTGTATGT GGATCAACAG 
GCGTCTACAT GGACGATTTC TTTCTATAAA AAAAGACGAA AAGCTGGCTG TCGCGAAGCT 
CGACGCTACA GATGA 

 

Protein sequence

MPDLKYITTD KNSGFPEYLD FATLRKLGIQ HVAELSGKIW TDHNLHDPGI TILEALCYVL 
TDLDYRTKLD FKDLIAAPAG AEGADDNFYT AAKILGNNPL TIADIRRMLI DIKGVRNAWL 
IPINEAETEA EYSLVYDCEA GVLDNTRLTK EQSAVPLKGL YRVYIEPDDV YAAAYEKDAC 
GNDVFPMDTV LTTIDQRLHA HRNLCEDFPD VVVLEKEPIS LCLHIELAAN YDPDDVLLNI 
YSRIQDFLSP APAFYNLQQL LEKGRTMEEI FEGRPYDFNK DEPLQQNGFI DVAELESLER 
ITELHASDLY RIIMQVPGVA GITRLMMTSF DEDGYALTDA AGNPVKQEGE EWCLHLKKDH 
RPVLSPETSN VIFFRNKLQF GANTEVVNQR YKKAISDYSK FPKAPAALDT IVPKGRQLDL 
AQYTSVQYEF PKVYMIGKND VPGDSTAARK AQALQLQAYL LFFDRMLADY FSQLSSVRKL 
FSLQSSADAR TYFPADLNGI PQLPSLLRYK KQLPRTTAGN TYNGMQLAYE PNDSDSGRKE 
YDSMYLRDEM IRRIISECSN NNVARKILQR EDNAYWFFQL TDKAGKVLLE STIFFDTAIA 
AEQAALDVIF LAALSGSYVK NNNRQDDIYS FDLVYNDAGD TEMLTALYET SEQYQERKER 
FLNHLLARFS EDFTDYALMM YNISGRKNDP ARNIADKAAF LSAYPETSAN RALAFNYKDP 
GTGFPVCGLE KRVAGLMGIR QSPSASLNNF DLVHAEKRTG FVCKLPEQLT PLFISDSLHD 
KAQIAAIFSQ FRELGKNKAN YKPYGCIGEG VYGFSIQSPV TAKEWISAKC SIEYTTGEER 
DTLIDWFVHF FEDDGQYKIY PQTQEGYYFL LPDDYGKTLL KSKQGFDTEE LALSKGYDCL 
ALLQEDVVWD VEPDVAAGNF RIIIVQQDVQ IAYHPQTYGT EEAALQKIKE LQEYFRQHYL 
VYQREASELY NWRMTHEGQA AWKGILPYKD MAQLPVAFVQ FVELASKAEN YQIVQTGDGV 
FRLQVVRTEQ GEEEGMSFST VISEHLSSFV NGEAAQQVQQ TYVTLFSGLW LTVSGAVTGV 
SAATYYFRDL DAPKDAGVVL LTTVRPVPDG STVTQVTRSI IRYAANPKNV TIKTLDNCHY 
IVQVQDDNGV VLAASSEVVD HAAAANLLER ILLKAAQDTL WVERGAAIDA YGLYWEDASA 
ATPLLQSIHV WETRKSAVTA FMEWLLNATA EDICPEQQAA NGYGYTVFSK DKSPFARQAQ 
WYASAEERDT TMLLLKQQLA ALQSSTGWSA LTLYHYYFKI SDKEGLLLQE PHYYTSYDAV 
RTAFYDTVKY GRQRQYYLLT VQDNCTYGFK IVDADKNVLA IHPFEYTTTV ERDAAVERTL 
RFLQTQGQTV SQVKLAGAWK YSWQWLSCCC WYPETALEGL DEKPEKEDAQ KTLVYIIEKL 
APVKDNYDVV QEESGFRVFL REGKERVAVH PHWYDCAKEA EAARDRLIAW SGFHLSKIEE 
GSYSVERDIR TDLYKNGETE QALGYRLWDR DFRIAHYLPK FESATDREDA LAALLQRYQR 
RLPAFTALEK GSSVVVSEHG AFYYQLRRND LLLWQSVTGY GSADAAAAAF EKECWGLLQR 
TLKQEHYSNW TPATTQLYLN DDKGQALAAA PITPGSYEAY IAAVQVRQQF ARKHGVFLNE 
EGTFSFHIYN PKTNSYEWES VHSYANPVDA EQALLEFRQL LRFRGNYCSD DETVGCYYSI 
NLGKVLLDIQ QVTRKCEGDK ETMTEADAWD RLQVFLDNID PDNRNLFPYT DYAVDCRYAF 
RLVDDNIYRV ALHTGWYQGM ERREEHRMAL LADIYCKKHL YGWFVKPENL NTDPRILDCY 
FQHPEKLNFA DLWMSYGQVP ALNQLWTIAE ETLPAVNAKL YYYQLYGKVD KDTKVMWRAV 
TRYNSATLAQ AAEAHFYVFL LEMARSAASY YYEPMAGCDN AYTLYLKDMD GKVIAVAPDV 
ICGEDIENDR ATRMFNAMLF PIVETGKGYT FEINDINQVQ GDTISYTYAA VWESVHTYDN 
PEDAWDALTT ACELLTDLRN YQRGDEDACG PFSVTLVNPE GVQAEHPLTY TSISARDAAM 
EHVLNAISAE GLHLLEHILM RPRTQQQSYE AWQLELNWYT QRESMVILQL INEAVFADAA 
SYVKALQDAA AANEVYVDQQ ASTWTISFYK KRRKAGCREA RRYR