| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5180 |
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| Symbol | |
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| ID | 8361357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6460821 |
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| End bp | 6463988 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644967328 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003124812 |
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| Protein GI | 256424159 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.565665 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0103301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAGTA ATATTATTAA AAGGCCCGTC CTTTCTATAA TGCTCTCACT CATTATAGTT
CTCCTGGGGG TATTGGGCAT GATGAGTCTT CCCGTAACGC AGTTTCCTGC GATCTCACCC
CCTACCGTAA AAGTAACAGC GGAATATCCC GGTGCGAACG GTGAACTACT GGTAAAAACA
GTGATCATTC CACTGGAAAG AGCCATCAAC GGGGTACCCG GTATGAAATA TATGACCTCC
GATGCGACGA ATACCGGTGA AGCCAATATC CAGGTTGTAT TTGACCTGGG TACAGACCCT
AACCTGGCGG CGTTGAATGT ACAGAACCGT ATCGCTAAGG TGATCAACAA ACTGCCTCCC
CTGGTAATAC GCGAAGGCTT GCTGACCAGT CTTGAACAAC CGGCAATGCT GATGTATGTG
AACCTGCACA GTACGGATAA ACATACAGAT GAACGATTCC TCTACAACTT TGCGGATATC
AATATCCTGC CGGAACTCTC CCGTCTGAAA GGGATCGGTA GTGCCCGTAT CCTGGGTACC
CGTGAATACT CGATGCGTAT CTGGCTGAAA CCAGACAGAA TGCTGGCGTA TAAAATCTCG
GCAGAAGAAG TCATGAAAGC CCTGAATGAA CAGAGTCTGG AGGCATCTCC GGGTAAAACT
GGCGAAAGCT CGGGTAAACG TTCGCAGGCA TTCGAATATG TCATGAAGTA TCCCGGTAGG
TTCAGTACCA AGGAAGAATA CGAAAATATC ATCCTGCGGG CCAATCCCAA CGGAGAACTC
CTACACCTGA AAGACGTCGC AGATATAGAA TTCGGCAGTC TGTTCTATGA TATCTATTCC
GACCTGAATG GTAGTCCTTC GGCCGCCATC GTATTAAAAC AATACTACGG TAGTAATGCC
AGCCAGGTCA TCAAGGAAGT AAAAGAAAAA CTGGAACAGA TCAAGTCAAG ATCCTTCCCG
CAGGGAATGG ATTATGAGAT CAGTTACGAC GTATCCAAGT TCCTGGATGC CTCTATTGAA
AAGGTATTGC ATACCCTGGT AGAAGCATTT ATTCTTGTGG GTATAGTGGT ATTCCTCTTC
CTGGGTGACT GGCGATCAAC GCTCATACCG GCACTGGCCG TACCGGTGTC ACTGGTGGGT
ACTTTTATCT TCATGCAGTT CTTCGGACTG ACCCTCAACC TGATCACCCT CTTTGCGCTT
GTACTGTCCA TCGGTATTGT GGTGGATAAT GCCATTGTGG TGATTGAAGC CGTACACGCG
AAAATGGCAG AAGAACACCT CTCGCCTTAC CTGGCTACAA AACGGGTCGT CCATGAGATC
AGCGGCGCGA TTATCGCGAT TACGCTGGTA ATGGCGGCCG TGTTTATTCC GGTGGCCTTC
ATGTCTGGTC CGGTAGGTAT CTTCTACAGA CAGTTCTCTA TTACCATGGC GACGGCGATT
ATCCTGTCCG GTGTGATCGC ATTGACGCTC ACTCCTGCCC TGTGTATCAT GATGCTGAAG
AATACCCATG GGCACCCCAG AAAGAGAACA CCGATCAACC GCTTCCTGGA CTGGTTCAAT
AACCGCTTTG ACAAACTGAC CGGACGCTAT ACCCGCCTCT TACGCAGGAT CGTCAACCGC
AGGGTTGTCA CTTTCGGTAT ACTGATCGGC TTCTGTGCCG GTACCTGGTT CCTGAGCAAC
ACCGTTCCTC CGGGCTTTAT TCCTGCTGAA GACCAGGGTA TGATCTACGC GGTGATCCAG
GCGCCTCCCG GCTCTTCGCT GGAAAGAACC AACGAGATCT CCAACAGATT ACAGAAAATA
GCGGAGAAGA TCGATGGTGT GCAATCTGTA TCCTCCCTGG CAGGTTATGA GATCCTGACG
GAAGGTACAG GATCTAACTC CGGTACCTGT CTGATCAACC TGAAAAGCTG GGAAGAACGC
AAACATTCCT CAGAAGAGAT CATCCAGGAG CTTGAAGAGA AAGCCAAAGA TATACCCGGC
GCTGTGATAG AATTCTTCCA GCCGCCAGCC GTTCCCGGTT ATGGTGCAGC AGGTGGTTTT
GACTTACGCC TGCTTGATAA AACCGGTACC AACGACTATA AGAAAATGGA AGCGGTAAAC
AGGGATTTTG TAGAAGCATT GAAGAAACGT AAAGAACTGA CAGCCCTGTT TACCTTCTAT
AGTGCCAGCT ACCCGCAATT TGTGTTGCAT ATTGACAACG CGATCGCACA GCAAAAAGGC
GTGACCATTG CCAATGCCAT GCAGACACTA TCTACCCTGA TTGGTAGTAA CTACGAGACC
AGCTTTATCC GATATGGCCG TCTTTACAAA GTGATGGTAC AGGCAGGTCC GCAGTACAGA
TCTATGCCGG AAGATATCAT GAAACTGTAT GTCAAGAACG ACCATGATGA AATGGTGCCA
TTCTCCACTT TTATGAAAAT GGAAAAGGTA TATGGTTTGA ATGAGATCAC CCGTTACAAC
ATGTTTACTT CTTCTGCGAT CAAGGGTTCT CCTGCTCCCG GATATAGCAG TGGAGACGCG
ATCAAGGCCA TCCAGGAAGT AGCGCAGCAG AGTTTACCAA GAGGATATGA TATCGACTGG
GGTGGTATGA CCAAAGACGA GGTAGGACGC GGTAATGAGG CGATCTATAT CTTCCTGATC
TGTCTTGCAT TCGTATATAT GATCCTCGCT TCACAATATG AGAGTTTCAT GCTGCCATTA
GCAGTAGTGC TGTCATTACC GGCGGGTGTA TTCGGCGCAT TCCTCTTCCT GAAATTACTG
GGACTGGAAA ACAATATCTA TGCACAGGTA GGTATGGTGA TGCTGATTGG GTTGTTAGGT
AAGAATGCGG TGCTAATCGT GGAGTTTGCG GTACAGAAGC ACCAGTCAGG CGAGTCGGTA
TTCCGCTCTG CGATAGAAGG TGCGAAAGCG CGTTTCCGCC CGATCCTGAT GACTTCCTTC
GCCTTCATCG CAGGGCTGAT ACCATTGGTA TTTGCAACAG GACCCGGTGC GATCGGTAAC
CGTACGATCG GTACGGCTGC TGCGGGCGGT ATGCTTTTCG GAACCATCTT CGGGGTTATA
CTCGTACCGG GCTTATACTA TTTCTTCGGT AAAATAGCGG AGAAACACAA GCTGGTGAAA
CATGAAGAAG AGCTTCCTCT AACTGAAGAA ATTGAACACA ATGTTTAA
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| Protein sequence | MFSNIIKRPV LSIMLSLIIV LLGVLGMMSL PVTQFPAISP PTVKVTAEYP GANGELLVKT
VIIPLERAIN GVPGMKYMTS DATNTGEANI QVVFDLGTDP NLAALNVQNR IAKVINKLPP
LVIREGLLTS LEQPAMLMYV NLHSTDKHTD ERFLYNFADI NILPELSRLK GIGSARILGT
REYSMRIWLK PDRMLAYKIS AEEVMKALNE QSLEASPGKT GESSGKRSQA FEYVMKYPGR
FSTKEEYENI ILRANPNGEL LHLKDVADIE FGSLFYDIYS DLNGSPSAAI VLKQYYGSNA
SQVIKEVKEK LEQIKSRSFP QGMDYEISYD VSKFLDASIE KVLHTLVEAF ILVGIVVFLF
LGDWRSTLIP ALAVPVSLVG TFIFMQFFGL TLNLITLFAL VLSIGIVVDN AIVVIEAVHA
KMAEEHLSPY LATKRVVHEI SGAIIAITLV MAAVFIPVAF MSGPVGIFYR QFSITMATAI
ILSGVIALTL TPALCIMMLK NTHGHPRKRT PINRFLDWFN NRFDKLTGRY TRLLRRIVNR
RVVTFGILIG FCAGTWFLSN TVPPGFIPAE DQGMIYAVIQ APPGSSLERT NEISNRLQKI
AEKIDGVQSV SSLAGYEILT EGTGSNSGTC LINLKSWEER KHSSEEIIQE LEEKAKDIPG
AVIEFFQPPA VPGYGAAGGF DLRLLDKTGT NDYKKMEAVN RDFVEALKKR KELTALFTFY
SASYPQFVLH IDNAIAQQKG VTIANAMQTL STLIGSNYET SFIRYGRLYK VMVQAGPQYR
SMPEDIMKLY VKNDHDEMVP FSTFMKMEKV YGLNEITRYN MFTSSAIKGS PAPGYSSGDA
IKAIQEVAQQ SLPRGYDIDW GGMTKDEVGR GNEAIYIFLI CLAFVYMILA SQYESFMLPL
AVVLSLPAGV FGAFLFLKLL GLENNIYAQV GMVMLIGLLG KNAVLIVEFA VQKHQSGESV
FRSAIEGAKA RFRPILMTSF AFIAGLIPLV FATGPGAIGN RTIGTAAAGG MLFGTIFGVI
LVPGLYYFFG KIAEKHKLVK HEEELPLTEE IEHNV
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