Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5119 |
Symbol | |
ID | 8361296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6393217 |
End bp | 6393792 |
Gene Length | 576 bp |
Protein Length | 191 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644967268 |
Product | peptide deformylase |
Protein accession | YP_003124752 |
Protein GI | 256424099 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.267223 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAATCG TTCCATACGG GTCTCCTATA TTAAGAAAGC AATGCAGCCC TGTAGACAAA AATTACGATG GACTTGACAA ATTAATCGAA AATATGTGGC ATACACTCGA AAATGCAAAC GGCAGCGGAT TAGCTACGCC TCAAATAAAT CTTCCCATAA GGATATTTAT TATTGACAGC GAAACAAGCT TCAATACCAT GAATCCTGAA GAACGAAAAG TACACTTTGA GGGGGATAAT GGAATACGGG AAGTATTTAT AAATCCTGAG ATAACTGAGT ATTCAGAAGC GAAATGTGAC GACCTGGAGG GATGTTTAAG CATACCCGGT GTCGCCGCAA TTGTTTCCAG ACCCTATGCT GTTAAAATAG AATATTATGA TCGCAATTTC CAAAAACATA CAAAAGCGTT TAATGGGTTA ACTGCAAGGA TAATTCAACA TGAATTTGAT CACATTGAAG GTCGGCTATA TCTTGATTAT CTGTCATCAT TGAAAATGAA GTTGCTTACT AAGAAATTGG CGCAAATAAA GAAAGGTAGG TATGCGTGTG AATATCCTAT GCGTAGAATT AAGTAG
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Protein sequence | MPIVPYGSPI LRKQCSPVDK NYDGLDKLIE NMWHTLENAN GSGLATPQIN LPIRIFIIDS ETSFNTMNPE ERKVHFEGDN GIREVFINPE ITEYSEAKCD DLEGCLSIPG VAAIVSRPYA VKIEYYDRNF QKHTKAFNGL TARIIQHEFD HIEGRLYLDY LSSLKMKLLT KKLAQIKKGR YACEYPMRRI K
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