Gene Cpin_5055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5055 
Symbol 
ID8361231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6300960 
End bp6301334 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content40% 
IMG OID644967203 
Productresponse regulator receiver protein 
Protein accessionYP_003124688 
Protein GI256424035 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000148317 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0527856 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTA TCTTATTAAT TGATGATGAT GCAGATGAAA TTAGTATCCT GAATGAAGCC 
GTGGAAATGA GTGGTACCGA TAGCGTATGC GATTGGGCAC AAGGTTTCGA AGTCGCTTAC
AGTTTATTAA AAGGAAATCA ACCTGACCTG ATCCTGCTGG ATTATAACAT GCCGGGGCGG
GATGGTTTAT TTTGTCTTGA GGAAATAAAA CGGAACCAGG ACTTTCGTCA TATTCCGATC
GTGATGTACT CCACTTATAT TGATTACGGT TTGCGACAGG AAGCCATGAA GAAAGGTGCG
TTTCGTTGTA TACAAAAGAC TACTTCTGTG CATGATCTTG TAAGGGAATT ACAGAACTTA
TTAATACAGG TCTGA
 
Protein sequence
MKSILLIDDD ADEISILNEA VEMSGTDSVC DWAQGFEVAY SLLKGNQPDL ILLDYNMPGR 
DGLFCLEEIK RNQDFRHIPI VMYSTYIDYG LRQEAMKKGA FRCIQKTTSV HDLVRELQNL
LIQV