| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5001 |
|---|
| Symbol | |
|---|
| ID | 8361177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6252900 |
|---|
| End bp | 6253958 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644967150 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003124635 |
|---|
| Protein GI | 256423982 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0712295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0100104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCA AACAACTCCT GCAGCAACGC CTTACTAATC AACAACTTGC AACACCCGCT
TTTAAAAACG CCCCGGATCT GGTACACTGG TGCGGCGCAG TACAGGCCCA GGACTACGAA
ATGTCCAAGT GGGCGGTCGG TATGCGACTG CCTGCGGCCA ATCACCGGGA AATAGAACAA
TGTATTGCCG ACGGTAAACT GGTACGTACC CACATATTGC GCCCCACCTG GCACCTGGTA
CACCCCTCCG ATGTACGCTG GATGCTGGAA CTGAGCAGTC CCTATATAAA GCAGTCAATG
GGCACTTATA ACCGCAAACT GGAACTGGAT GATAAAATAT ACCGGAAAAG CAATAAAGTC
TTCGAAAAAG CCCTTAAAGA CGGCAAACAA CTGACCCGTA CCGAACTTAC AGCCGAACTC
CAAAAAGCAA AGATCGCTAC CGATGATCTC CGTATGAACT TCCTGCTGAT ACAGGCAGAA
CAGGATATGA TCATCTGTAA CGGTGGTAAA CGTGACAAAC AGATCACCTA TGCCCTGTTT
GAAGAACGTG TAGCTCCCGC GCCCGGCAAA AACCGGCAGG AAGCCCTGGC TACATTGGCA
CTCCGCTATT TCAACAGCCA CGGTCCCGCT ACCCTGAAAG ATTTTACCGG CTGGAGCGGA
CTGCCCGTCA CAGCCGCCCG CGAAGGATTA CAACTCGTAC AGGATCAGTT GCATACAGCA
CCCTTCGGCG AATTAACCTG TTATGGTCCG GCACAAGCAA CGGAAGCCAC ATCCACGGGC
AATGACGTAT TGCTCATTCC TAACTATGAC GAATATCTTG TTGCCTACAA AGACAGGGAA
GTGATACACA GTGGCGACAG CGCATCCTCC CTGAACCGGG ACGGCAATCC CCTCTTCAGC
AATATCATCC TTGTCAAAGG ACAGATCGCG GGTACCTGGA AGCGGACATT TAAAAAGAAA
GAAGTGCTTA TCGACCTCTA CCCCATCACC CCCTTCAACA AAAGCACACA AGGCAAACTG
GACAAGGAAA TAGCCCGCTT CAAACAGTTC TACAACTAA
|
|---|
| Protein sequence | MTAKQLLQQR LTNQQLATPA FKNAPDLVHW CGAVQAQDYE MSKWAVGMRL PAANHREIEQ
CIADGKLVRT HILRPTWHLV HPSDVRWMLE LSSPYIKQSM GTYNRKLELD DKIYRKSNKV
FEKALKDGKQ LTRTELTAEL QKAKIATDDL RMNFLLIQAE QDMIICNGGK RDKQITYALF
EERVAPAPGK NRQEALATLA LRYFNSHGPA TLKDFTGWSG LPVTAAREGL QLVQDQLHTA
PFGELTCYGP AQATEATSTG NDVLLIPNYD EYLVAYKDRE VIHSGDSASS LNRDGNPLFS
NIILVKGQIA GTWKRTFKKK EVLIDLYPIT PFNKSTQGKL DKEIARFKQF YN
|
|---|
| |