| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4876 |
|---|
| Symbol | |
|---|
| ID | 8361052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6098982 |
|---|
| End bp | 6099923 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644967026 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_003124511 |
|---|
| Protein GI | 256423858 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.480301 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.596683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACC CAATCATCGA CGATGCAAAG TCAGTGAACA GTAACTCGAG ACGATCCATC
TTTATCTATG TCATTATTGT TATCCTGGCG CTGACAGCAT TCATCTTTCT GTTTAAGAAC
GTCTTTGCAG ATAAACGCAC GAGTGACGCC AGCATCCTGA AAAATGAGCT GTATATGAAC
GAAGAACTGG TCTATGCGGA TAATACCAGC GGCGCAAAAA ACTGGCGCTG GGAATTCGGG
GACGGTACCA GTTCAAATAC ACAGAGTGGT ACTTATCACT ACGGAAAGGC AGGCTCTTAT
ATCGTGCGTC TCACCATAGA TGGGGATATG AAGGTACAGT TTCCCGTAAC AGTGAAAGAT
ACCGTGATCG CACAGACAGA TACGACACTC ATCATCAACG GACCCACTTC CGGCGTAGTC
AATGAAGAAG TACGTCTGGA AGCAGAAGGG AAAGGAACAC AGTTTGAATG GTCTTTCGGA
GAGACGGGAA GGGTAGATGT AAACGGCCGT ACTGCGCTGT ATACCTTCCG GAAACCGGGT
ACCTATATGG TAAGACTGAT CAGTGATAAG AGTCATCCTG TCACCCATAT CATGTATATC
ACTGATCCGA GTTTAGATAC GGTACTGGTG GTGCCCGGAG AAGGGGAGCG CAAGATCATT
GACGATATTC GTGCACGTCT GCAGGCCATT GCTGATGGAG AAGACTTTAA CAGTAATTAC
TACTACCTCA TCAATAAATA TCTGTGCGGC AATGAAAAGA TCACAGTTGC TATTGAACAG
GATAGCAACA AAAAAAGCAG TGACTTCTAT ACTTACTGTA TGGGACTCAC ATTCGGTGGA
GAAATTTCTG TCGATCAGGC ACAGTTAACC ATTAGTCCGA AAGCATCCTG CGCCACATTG
TTAAACATTA AACAACACTC CGCCCGCACA GCGAATAAAT AA
|
|---|
| Protein sequence | MFDPIIDDAK SVNSNSRRSI FIYVIIVILA LTAFIFLFKN VFADKRTSDA SILKNELYMN
EELVYADNTS GAKNWRWEFG DGTSSNTQSG TYHYGKAGSY IVRLTIDGDM KVQFPVTVKD
TVIAQTDTTL IINGPTSGVV NEEVRLEAEG KGTQFEWSFG ETGRVDVNGR TALYTFRKPG
TYMVRLISDK SHPVTHIMYI TDPSLDTVLV VPGEGERKII DDIRARLQAI ADGEDFNSNY
YYLINKYLCG NEKITVAIEQ DSNKKSSDFY TYCMGLTFGG EISVDQAQLT ISPKASCATL
LNIKQHSART ANK
|
|---|
| |