| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4628 |
|---|
| Symbol | |
|---|
| ID | 8360801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5779383 |
|---|
| End bp | 5780201 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644966782 |
|---|
| Product | alpha/beta hydrolase fold protein-3 domain protein |
|---|
| Protein accession | YP_003124270 |
|---|
| Protein GI | 256423617 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0657] Esterase/lipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.596943 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.391369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAT TTAAGGAAGA ACGGGAAGGT TTTGAAGCTA TTGGGAACAG TTATGCTGTT
GCGCAAGGCA TCAACAGGAG AGATGTAAAT ATTGAAGGGG TTCCTTGTGC CTGGTTCTCG
CCGGATGACG CTTCTGAAGA TGATATTATA TTTTACATCC ATGGTGGCGC TTTTATCTAT
GGTTCGCTGA GGTCACATGC ACCCCTGGTC AGTCATATTG CCCGGGCCAT GAATAAACGG
GTACTGGCGA TTGACTACCG CCTGGCTCCT GAATATCCAT TTCCTGCCGG TATTGAAGAT
TGTGTAGCGG TAATAACCAC ACTTGCTGCT GGTAATCCTA ACCTTACTTT TGGTATCATA
GGAGATAGTG CAGGGGGCAA TATCAGTATG TCCGTACAAC TTTTCCTGCG GGAAGCTGGC
GGACCAGCCG CAAGATACAC GATCGTTATT TCCCCCTGGG TGGATCTTAC CTGCTCCAAT
GCCAGCTATG AACACAAGGA AAAACTGGAT ACAATATTAT CACAGGCTTA TCTGAGGCAA
TGTGCCGCTA TGTATGCTGC TGGTGGTGAT TTGTCAAACC CTTACCTGTC GCCTGTAAAT
GGGGAATTTC ATGGGCTGGC GCCGGTATTG ATATTATGTG GTACTTATGA GATCCTGGAA
GATGACGCTG TCAACTTGTA TAAACGCTTA CTTGAATGTC AGGTGAGGGC GGAAATAATG
TTGTTTGAAG GTCAATTACA CGTCTGGCCG TTCACAGAGA TCAGCAGTGA AGCCTCGCAG
CGGGCATTGA GGGAAATGGC GGTTTTTAGC TGCATTTAG
|
|---|
| Protein sequence | MNKFKEEREG FEAIGNSYAV AQGINRRDVN IEGVPCAWFS PDDASEDDII FYIHGGAFIY
GSLRSHAPLV SHIARAMNKR VLAIDYRLAP EYPFPAGIED CVAVITTLAA GNPNLTFGII
GDSAGGNISM SVQLFLREAG GPAARYTIVI SPWVDLTCSN ASYEHKEKLD TILSQAYLRQ
CAAMYAAGGD LSNPYLSPVN GEFHGLAPVL ILCGTYEILE DDAVNLYKRL LECQVRAEIM
LFEGQLHVWP FTEISSEASQ RALREMAVFS CI
|
|---|
| |