Gene Cpin_4074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4074 
Symbol 
ID8360247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5068138 
End bp5069004 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content48% 
IMG OID644966246 
Productprotein of unknown function zinc metallopeptidase putative 
Protein accessionYP_003123735 
Protein GI256423082 
COG category[R] General function prediction only 
COG ID[COG2321] Predicted metalloprotease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.126903 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.130895 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTGGC AAAACAGAAG ATTAAGCGAT AACGTAGAAG ACCGTCGTGG TGGCGGCGGT 
GGTGGTGGAA TGAGAAACAT CGGCATCGGT GGTGGTATCG GTGGTATCAT TATCATTGTT
CTGGCCTTGT TATTCAACCA GGATCCCCAA CAGGCTTTGC AATCCGTTCA GCAAGGTACC
GGCGGTGCCC AGCAGACAGA ATCCAAAACC GTTACCAACA ACAGCGACGA GATTGCCCGG
TTTGCATCGA CAGTCCTGGC AGATACGGAA GACGTTTGGG AAAAGCTGTT TGCCGAAATG
AACAAGCAAT ACAAAGATCC GGGTATGGTA TTGTATACCG ACTATGACCA GTCCGGCTGT
GGTGCAGCGC AATCTGCTAT GGGACCTTTT TATTGTCCTG CGGATGAGAA AGTTTATCTT
GACCTGAGCT TCTTCAATGA AATGGAACAG CGCTTCAAAG TAGCAGGCGA TTTCGCTATG
GCTTACGTCA TTGCACATGA AGTTGGTCAT CACGTACAGA ACCTCCTTGG CACCAGTCGC
AAGGTACAGG CGATGCGTTC TCAGATAAGC GAGCGTGAAT ACAATAAATT ATCCGTTAAA
CTTGAGTTAC AGGCGGATTT CCTTGCTGGT GTATGGGCGC ATCATGCACA GAAGATGCAG
AACATCCTTG AAGCAGGTGA CATTGAAGAA GCTTTGAATG CTGCCAGTGC TGTTGGCGAC
GATGCATTGC AAAAAGCGGC TTCCGGGCAT GTTGTTCCGG ATGCTTTCAC GCATGGTACA
TCTGCGCAGC GTATGAAGTG GTTTAAGAAA GGTTTTGAGA CCGGTGATGT CAAACAAGGT
GACACTTTCA ATACGACAGA TCTTTAA
 
Protein sequence
MRWQNRRLSD NVEDRRGGGG GGGMRNIGIG GGIGGIIIIV LALLFNQDPQ QALQSVQQGT 
GGAQQTESKT VTNNSDEIAR FASTVLADTE DVWEKLFAEM NKQYKDPGMV LYTDYDQSGC
GAAQSAMGPF YCPADEKVYL DLSFFNEMEQ RFKVAGDFAM AYVIAHEVGH HVQNLLGTSR
KVQAMRSQIS EREYNKLSVK LELQADFLAG VWAHHAQKMQ NILEAGDIEE ALNAASAVGD
DALQKAASGH VVPDAFTHGT SAQRMKWFKK GFETGDVKQG DTFNTTDL