Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4038 |
Symbol | |
ID | 8360211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5023764 |
End bp | 5024504 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644966211 |
Product | protein of unknown function DUF178 |
Protein accession | YP_003123700 |
Protein GI | 256423047 |
COG category | [R] General function prediction only |
COG ID | [COG1427] Predicted periplasmic solute-binding protein |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.063784 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGAACGGA AAGTAAAAGT AGCGGCAGTA AGTTATTTGA ATACCAGGCC ATTATTGTAC GGATTCAGGG ATCATCCCGT GATGAATATG CTGGAACTGA GTGCTGATTA TCCTGCTAAA ATTGCACAGC AACTGATTGA TGGAGAAGTA GATGTGGCGC TCGTGCCAGT AGCGACCATC CCTAAACTGC AAGAATATCA TATCATTTCT GATTTTTGTA TTGGTGCGGA AGGTCCGGTA GCTTCTGTTT GTCTTTTCAG CGAAGTTCCC CTTAATGAAA TAAAACGTAT CTATCTCGAT TATCAGAGCC GTACCTCAGT CGCCTTGCTG AAAGTACTGG TGCGTGAACA CTGGAAACTG GATGTTGAAC TGATCGAGAC TAACGGCGAT TACGAAGATA AGATCAATGG TACCGACGCC GGACTGGTGA TTGGCGACCG TGCACTCGAA CAGCGACATG TGTCTCCTTA TATATATGAC CTCGCTGAGC ATTGGATGAG ATTTACCAGT CTGCCTTTTG TATTTGCCGC CTGGATCAGC AACAAACCCT TACCGGCAGA GTTTATCCAG CAGTTTAACA ATGCCAACAG TCTCGGTATT CATAATATAC CGGCTGTTGT AGCAGAGAAT CCTTATCCGC TGTACGATCT TACAACGTAT TACACGCAGA ATATCAGTTA CCCGCTGACG CCGTCTAAAC GACAGGGCTT ACAAAGGTTT CTTGGGTTTC TGATGAAATA G
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Protein sequence | MERKVKVAAV SYLNTRPLLY GFRDHPVMNM LELSADYPAK IAQQLIDGEV DVALVPVATI PKLQEYHIIS DFCIGAEGPV ASVCLFSEVP LNEIKRIYLD YQSRTSVALL KVLVREHWKL DVELIETNGD YEDKINGTDA GLVIGDRALE QRHVSPYIYD LAEHWMRFTS LPFVFAAWIS NKPLPAEFIQ QFNNANSLGI HNIPAVVAEN PYPLYDLTTY YTQNISYPLT PSKRQGLQRF LGFLMK
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