| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4024 |
|---|
| Symbol | |
|---|
| ID | 8360197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5007240 |
|---|
| End bp | 5009690 |
|---|
| Gene Length | 2451 bp |
|---|
| Protein Length | 816 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644966197 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003123686 |
|---|
| Protein GI | 256423033 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.220512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.134722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAT GGCTTCGTAT AACCCTGATT GTTTCCGGTA GCCTGATTGG CCTCCTCATA
TTGCTATGGC TCGGACTAGC ATGGCATATC CGGCATAACA AAGCCCAGAT TCTGCGTCAG
ATCAGCGATC GGCTGAATGA CAGACTACAT GGAGGAGAAC TGTTGATAAA AGACATGGAA
CCTTCACTGG TACGCAGTTT TCCGAATGTA TCGGTTGCGC TGGAAGGAGT GAGTGTTAAG
GATAGCCTGT GGAATATACA CCATCATCCC TTAGTAGATG TTGCACGTAT CTTCGTAAAA
ATAAACACTT TCTCGCTACT TAAAAAACAA TTGGATATCA AACAGATATC CCTGGAGGAA
GGAAGCATCT ATTTATTCAC TGACAGCACG GGTTACAGCA ATACCGGTAT GCTTAAAAAG
AATACAAAAG TAAAGGCAGA AGGTGGGAAA GGCATAGCTG CCGATATTAC CCGTTTTCAG
CTGAATAATG TCAACCTTGT GATCGATAAT CAACAAAAAC ATAAATTATT CAGTTTTGCT
ATCCGGAACC TCAGAGGGAA CCTCCGTAAC CATGATTCCG GCTGGGTGTG TAATATGCGC
ACCGCCCTGC AGGTGGCCAG TCTGGCGTTT AATACCGAAA GGGGAAGTTT TCTGAAAGAT
AAATCCTTAC AGACAGACCT GGAAATTACC TATAACAGGA GCCGGAAGCT GCTTGAAATC
CCGCAACAGG TATTGTATGT AGCAGATCAG AAGATTAGCG CGGGCGCCTC TTTTTCCTTT
GGCGATCAGC CGCGTCCCTT TACCGTGCAC ATTATTGCCG AACAGATCCC TTTTCATCTG
GCTACCTCCA TGCTGACGCC AAAGATCACC GCCAAACTGG ATAGTATTAA CCTGGACAAT
CCGCTGGATG CGGACTGTGT GATAAAAGGC AGGATGCAAC CGGGTGATCA GCCAGGGGTG
AATGTGACCT GGAAAACCGA GAATAATCAT GTCACGACAA AGGGCATGGA ATTACAGGAA
TGTAGCTTTA CAGGACGTTT TTCGAATGAA TGGCAACCGG GAGAACATAC GGATGAGAAC
TCTGTGGTCA GTATCTACGG ACTGAAAGCC CGTACCTATG GCATTCCGGT AGCTGCTGAT
ACGATCGATA TTACAAACCT GCGGCATCCT ACACTGGCAG GTTATTTTAA GGCGGATTTT
CCGCTGACGG ACCTGAACGA TGCCCAGGGA GAGGATGGGG TATTTAAATT TACAGGTGGT
ACAGCTAAAG CAGGATTGTA TTACAAGGGG GGAATCACCG CCGGGGATAC CATTATTCCT
TATCTGAAGG GACAGGTTCA GCTGAAAGAC GGGGCCATGG AATATACACC CAGGAACCTG
CAATTCAGTG CCTGTAATGC CCTGATGCTC TTTAATGGCA ATGACCTCTC TATGGAGAAT
ATTACCATCA AAACGCAGAA GAGTAGTCTG CAGATGGAAG GAAGCGTCCG GAATATCGCC
ATACTTTACT TTTCAGCGCC GGAGAAACTG GAACTGGACT GGCAGGTGCG TAGTACAGGC
ATCGATCTGA ATGAATTCAA GGCTTTCCTG GGCAAACGCC GGCAGGGCAA ACGTACCAGT
GTAGCGGCCA ACAGGCGTAA GATCAGCCGT ATTGCCAGTC AGCTGGATGT AATGCTCAGC
TCCTGTATCA TCAATATCAG CGTGCAGCTG GATAAACTCA GCTATGGGAA TTTTATGGCC
CAGCAGGTAA AGGCTGATCT TTCCATGAAG GAGAGTAATG TGAATCTGCG ACAGGTCTCC
CTGACCCATG CGGGTGGCAC TATAAATATG AGCGGCGTAA TGACGCAGGA CGGAATCAAT
AACCGATTTA AGATCAATAC GGGCATCCGG AACGTACATG TGGATCAGCT GTTTCATGCT
TTTAACAATT TTGGAATGCA GTCGCTGAGT TCGAAAAATC TCAGGGGGAT TTTGTCCGCT
ACAGCTGCTA TCAGCGGTAA TATCCTGGAT AACGGGAAAA TGTCGCCACA ATCTATGTAC
GGCACATTGT CCTTTGACCT GCGACAGGGT GCACTGGTGC ATTTTGAGCC GCTGGAAGAT
ATCGGCAACC TGGTGTTCCG TCGCCGGAAC CTGGATAATA TCACTTTCGA TAATGTTAAA
AATACACTGA CGCTCCAGGG AAACAAGATC ATTGTGCCGC CCATGCAGAT CAATTCCAGC
GCCCTTTATA TGGACATTTC GGGTGTATAT GCCATGACCA AAGGAACAGA CATGTATATC
ACGGTACCTT TGAGGAATCC GAAAAAGGAT GAAGACCTGG ATAAGGAGGA AAAAAAGCTG
CGGAGGAAAA AAGGGATTAT CCTGCATTTA CATGCTATGG ACGGGGAAGA TGGGAAGGTA
AAAATCAAAT TAGGGAGTAA AAAGGACAAA CCGGAAGAGG CAGAATTGTA A
|
|---|
| Protein sequence | MQKWLRITLI VSGSLIGLLI LLWLGLAWHI RHNKAQILRQ ISDRLNDRLH GGELLIKDME
PSLVRSFPNV SVALEGVSVK DSLWNIHHHP LVDVARIFVK INTFSLLKKQ LDIKQISLEE
GSIYLFTDST GYSNTGMLKK NTKVKAEGGK GIAADITRFQ LNNVNLVIDN QQKHKLFSFA
IRNLRGNLRN HDSGWVCNMR TALQVASLAF NTERGSFLKD KSLQTDLEIT YNRSRKLLEI
PQQVLYVADQ KISAGASFSF GDQPRPFTVH IIAEQIPFHL ATSMLTPKIT AKLDSINLDN
PLDADCVIKG RMQPGDQPGV NVTWKTENNH VTTKGMELQE CSFTGRFSNE WQPGEHTDEN
SVVSIYGLKA RTYGIPVAAD TIDITNLRHP TLAGYFKADF PLTDLNDAQG EDGVFKFTGG
TAKAGLYYKG GITAGDTIIP YLKGQVQLKD GAMEYTPRNL QFSACNALML FNGNDLSMEN
ITIKTQKSSL QMEGSVRNIA ILYFSAPEKL ELDWQVRSTG IDLNEFKAFL GKRRQGKRTS
VAANRRKISR IASQLDVMLS SCIINISVQL DKLSYGNFMA QQVKADLSMK ESNVNLRQVS
LTHAGGTINM SGVMTQDGIN NRFKINTGIR NVHVDQLFHA FNNFGMQSLS SKNLRGILSA
TAAISGNILD NGKMSPQSMY GTLSFDLRQG ALVHFEPLED IGNLVFRRRN LDNITFDNVK
NTLTLQGNKI IVPPMQINSS ALYMDISGVY AMTKGTDMYI TVPLRNPKKD EDLDKEEKKL
RRKKGIILHL HAMDGEDGKV KIKLGSKKDK PEEAEL
|
|---|
| |