| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3980 |
|---|
| Symbol | |
|---|
| ID | 8360153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4950222 |
|---|
| End bp | 4951010 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644966154 |
|---|
| Product | lipolytic protein G-D-S-L family |
|---|
| Protein accession | YP_003123643 |
|---|
| Protein GI | 256422990 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2755] Lysophospholipase L1 and related esterases |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.235003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.737943 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAC AACAGAATTC CAACCGGAGG AGTTTTATCC GGAACGTTTC ACTGGGTAGC
CTGGCTGCCC TGAGCCTTCC TCAGATCGTG TCAGCAGCTG TCAATTCCAA CGAAAGTGAA
AGCCCGGCCC GTGCCAAAAA ACTGACATTG AAAAAAGACG CCGTTATCCT CTTCCAGGGA
GACTCCATTA CAGATGCAGG ACGTAAACGC GATAAAATGG ATCCTAATGA CCAGGGTGCA
CTGGGTAATG GCTATGCCTA TCTGGCGGCA GCGACTCTGC TGACTGAATT CCCTGATAAA
AACCTGAAAA TTTATAACAA GGGTATCAGC GGTAATAAGG TGTACCAGCT GGCAGAAAGA
TGGGACGCTG ATTGTCTGCA ACTGAAGCCG GACGTTCTCA GCATTCTTAT CGGTGTAAAC
GATTACTGGC ATACGCTGAC CGGTAACTAT AGCGGTACCG TAAAGACGTA CCGCGAAGAC
TTCATCAAAC TGCTGGATCG TACCAAACAG GCACTGCCGG AAGTACAGCT GATCATTGGT
GAGCCGTTTG CCGTAAATGG TGTGAAAGCG GTTGATGATA AATGGTTCCC TACGTTTAAT
GAATATCGTG TTGCCGCGAA AGAGATCGCT AACCAGTTTG GAGCTGTGTT TCTGCCTTAC
CAGACGATCT TCGATAAAGC GCAGCAACAT GCGCCGGGTT CCTACTGGAC AGGGGATGGC
GTACATCCGG CTATTCCCGG AGCGGGCCTG ATGGCGGCCG CCTGGGTGGA GATGGTGAAG
AAAAATTAG
|
|---|
| Protein sequence | MEQQQNSNRR SFIRNVSLGS LAALSLPQIV SAAVNSNESE SPARAKKLTL KKDAVILFQG
DSITDAGRKR DKMDPNDQGA LGNGYAYLAA ATLLTEFPDK NLKIYNKGIS GNKVYQLAER
WDADCLQLKP DVLSILIGVN DYWHTLTGNY SGTVKTYRED FIKLLDRTKQ ALPEVQLIIG
EPFAVNGVKA VDDKWFPTFN EYRVAAKEIA NQFGAVFLPY QTIFDKAQQH APGSYWTGDG
VHPAIPGAGL MAAAWVEMVK KN
|
|---|
| |