| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3927 |
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| Symbol | |
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| ID | 8360100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 4875285 |
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| End bp | 4877099 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644966101 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_003123590 |
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| Protein GI | 256422937 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3500] Phage protein D |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00332693 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00450013 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGCAC AAAGCCCGAC AAATCTGACT GATCCTACAT TGAAATTCAC CGTCTCTGTG
GAAGGCGTCG CCGTCCAGGA GGCTGTTTTT ATATCTTCCA TCGATGTGAC GCATGAGATC
AATAAAATCT CATTTGCGGA AATCGTCTTT GTGGAAGGCA CCGGAGATAT CGGTTCCGCC
GGTGATGCGG GAGACTTTCC CGCCAGCGCG CGGAAGGACT TTGTTCCCGG TGGTAAAATC
GCCATCACCG CCGGGTACGG TGATGATACC GAACAGTCCA TTTTCAAAGG TGTCATTGTC
AAACAGGCTT TACGTATTAA TAAGTCCACC GGGTTTGAAC TGATCCTGAC CTGTAAACAC
GAAGCCGTTA AGATGACACT GGGGCAGAAG GAGGGAGAAT TCTCCGAAAT GACCGACAGT
GACGTGATGA CAAAAGTGAT CGGTGTTTAT GGTCTGAGTA ATAAGATAGA CAGTACTGCT
GCACAGCAGG AGATGTTATT TCAGAAGGTG GCGACGGACT GGGACTTTAT ACTGGCCCGT
GCTTCATTCA ATGGTTTTAT TACCACGATG GGCGACGACG GTATCACAAT CGGAAAACCA
AACTTCACTG CCGATCCGGT GTTGAATATT ACTTACGGTG ATTCGATCAT CTCCTTTAAT
GCGGAGATCA ATGCGGAAAA ACAGCCGCCT TCCCTGGACG CTTACGCATG GGATCCACAG
ACGCTTGCAT TGATCACCTC GGCAGGAGCA GAGCCAACCC TGAATACCCA GGGCGCCATC
ACGGCTAAAT CCCTCTCAGA AAAACTCGGG CAGACCGGGC TGAAAATGAT CTCCAGCGCC
CCGCTGGCAC AGGCGGATCT GAAAGTATGG GCGGACGGTA CGCTGCTGCG TATGCGTATG
AATGCGATTA GAGGAAATGT ATCTTTCATC GGGAACGCTT TACCTCAACC GGGTAAGACG
ATAAAGCTGG AAGGCGTAGG ACCGCAGTTT GAAGGCAACG CTTTTATCAA TAAAGTCCGG
CATGTGCTGG AAGACGGTCA ATGGACCACT CATGTGCAGT TTGGTGTGCC GGACAAACCG
ATCTTTGAAA AGGAATTGTT TTCCAGTACA GCGGCTAACG GACAGATGCC GGCTATCCAC
GGTCTGCAAC TGGCTACGGT GTCTAAGATC TCTGAAGATC CGGGAGCTGT ATACCGTATA
CAGGTAAAGC CGGCTGCCAA TGTCGACGTA CAGAAAGGTA TCTGGGCGAG ACTGGCTAGT
TTCTATGCTA CTTCAGGTGC TGGAGGGGTG TTTTGTCCGG AGGTAGGTGA TGAGGTGATT
CTCGGTTTCC TCGAAAGTGA CCCGCGTTTC CCGGTCGTAT TAGGTAGTCT GTTCAGCAAA
GGGAAAGTGC CGCCGGTGAC GCAGGCCGAC GAAAAGAATA ACACCAAGGC ATTCTATAGC
CGCAGTAAAC TGGAGATCAA TTTTGACGAC GATAAAAAGA TCCTGAAGAT CACTACACCG
GGTAATAATA TGATTACCCT GAGCGACGAC GGGAAGTCCA TAGAAATAAA AGATCAGAAT
AATAATAGTA TAAAACTCGA CGATAGCGGT ATATTGCTGA ATTCTCCGAA AGATATTACC
CTGAAAGCGA CCGGTAACAT TACCTTAAAT GCAACCGGTA AGGCAGAACT GAAAGCCACA
CAGGATATGG AGATCAGTGG CATGAATATC AAACAGACCG CCCAGGTGGG CTTTACGGCT
AAAGGGACAG CCAATGCTGA ACTTTCCGCC TCCGGCCAGA CAGTCGTCAA GGGCGGTATG
GTGATGATCA ACTAA
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| Protein sequence | MPAQSPTNLT DPTLKFTVSV EGVAVQEAVF ISSIDVTHEI NKISFAEIVF VEGTGDIGSA
GDAGDFPASA RKDFVPGGKI AITAGYGDDT EQSIFKGVIV KQALRINKST GFELILTCKH
EAVKMTLGQK EGEFSEMTDS DVMTKVIGVY GLSNKIDSTA AQQEMLFQKV ATDWDFILAR
ASFNGFITTM GDDGITIGKP NFTADPVLNI TYGDSIISFN AEINAEKQPP SLDAYAWDPQ
TLALITSAGA EPTLNTQGAI TAKSLSEKLG QTGLKMISSA PLAQADLKVW ADGTLLRMRM
NAIRGNVSFI GNALPQPGKT IKLEGVGPQF EGNAFINKVR HVLEDGQWTT HVQFGVPDKP
IFEKELFSST AANGQMPAIH GLQLATVSKI SEDPGAVYRI QVKPAANVDV QKGIWARLAS
FYATSGAGGV FCPEVGDEVI LGFLESDPRF PVVLGSLFSK GKVPPVTQAD EKNNTKAFYS
RSKLEINFDD DKKILKITTP GNNMITLSDD GKSIEIKDQN NNSIKLDDSG ILLNSPKDIT
LKATGNITLN ATGKAELKAT QDMEISGMNI KQTAQVGFTA KGTANAELSA SGQTVVKGGM
VMIN
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