Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3921 |
Symbol | |
ID | 8360094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4871150 |
End bp | 4871959 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644966095 |
Product | hypothetical protein |
Protein accession | YP_003123584 |
Protein GI | 256422931 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000599634 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00572249 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGATTTG CTTTGCTGAC GGAGATTTAT TTCCGTCACA GCTACTTTGC TGATAATTGT TTCAGGGACC TACGCTTGCT GCTGCCTCAA CAAACAGTCA CAGAAATGCG GCGTTATGGG TTACTATTCC GCAGATTGCC GGACAGGATC GTCGTGCTCT TCAATGCCGC CGGTACTGAT CGGCAGACCC TGTTACAGGA GCGTATTACG CTGCTTTTCG AGTTACATCT TCAGGATAGA AACTTCTATA ACTACACCGC ATTAGAGCAA ACAGACGTCC CCGGAACAAT GCTATTGTTC AGCAATCAGC GTGAATATGC TTCGGGTAAA TTGCACAGGC AGGCGCTTGT TTCTGCGGAT GATCTCATCC CTGCGGAGAC AAGCAATGGA GGTATCTCTG CCCGTCCGTT TGCCAGGATG GTATTAACAT TCACGCCCGA TCTGCTGCCG GTATATGAAA TCAGCTTCGC CGCAAAGGCA ACAAGGTGGT CTTACTTCCT GATGAGCAAC GATCTTGCAT CGCTTGCCAA ACCATCCATT GTAGATGCCC GTGGTCGTAT ACAATTTGCT GCACCGCAAC TGATAGATCT GCCTGACGGT AAACGCGTTT ATGCACTTAT ATCCGAACAG GCGTTAACGT TATCTCAGCG ACCGGCATAT ACCTTTCAGC TATTAGAAGG CGGAGGTGAC AGTGAGCCAT ACCGGACCAT CATCCAGGCA TTACCATCTC CTGATATCAC CGCCGTTTCC GCAGCTGGTA TAGCTGTATA CGACCGCACC CAGGCATACT CTGAAATCTT TTTATACTAA
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Protein sequence | MGFALLTEIY FRHSYFADNC FRDLRLLLPQ QTVTEMRRYG LLFRRLPDRI VVLFNAAGTD RQTLLQERIT LLFELHLQDR NFYNYTALEQ TDVPGTMLLF SNQREYASGK LHRQALVSAD DLIPAETSNG GISARPFARM VLTFTPDLLP VYEISFAAKA TRWSYFLMSN DLASLAKPSI VDARGRIQFA APQLIDLPDG KRVYALISEQ ALTLSQRPAY TFQLLEGGGD SEPYRTIIQA LPSPDITAVS AAGIAVYDRT QAYSEIFLY
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