Gene Cpin_3895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3895 
Symbol 
ID8360068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4847496 
End bp4847834 
Gene Length339 bp 
Protein Length112 aa 
Translation table11 
GC content43% 
IMG OID644966069 
Productphage head-tail adaptor 
Protein accessionYP_003123558 
Protein GI256422905 
COG category[R] General function prediction only 
COG ID[COG5614] Bacteriophage head-tail adaptor 
TIGRFAM ID[TIGR01563] phage head-tail adaptor, putative, SPP1 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0300067 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGA TAAAACCGCA GGGGCAGTTT AACCGCCGTA TCCAGGCGCA GAAGCTCTCA 
GTGACACAGA ACGAAGCTGG AGGAATGGTT GAAACTTGGT CGTCTTTGTT TGAAACATGG
GCATACGTAG GACCGGTTAA ATCCTGGCGG CATTTGGAGA TTATGAAGAA TACACAAAGC
GCATCCTACG AAGTCCAGAT CAGATATACT CCGAGTAGAC AGATTGATAA TAATGTGCGA
TTTGTTTATG AAGGCAAGGT ATTGGTCATA AACAGTATAG AAGAAGATGT GGAAGGCAAC
AAACGGTTTT ACGTACTCAT ATTAACAGAG CAAGTGTAA
 
Protein sequence
MSKIKPQGQF NRRIQAQKLS VTQNEAGGMV ETWSSLFETW AYVGPVKSWR HLEIMKNTQS 
ASYEVQIRYT PSRQIDNNVR FVYEGKVLVI NSIEEDVEGN KRFYVLILTE QV