| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3414 |
|---|
| Symbol | |
|---|
| ID | 8359580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4226141 |
|---|
| End bp | 4227109 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644965587 |
|---|
| Product | 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein |
|---|
| Protein accession | YP_003123082 |
|---|
| Protein GI | 256422429 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.175733 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGAA TTAACCAGAT TGCCACAGTT ATAATTGGAG ACAAAACACC TGTCAGCAGC
CTGCTGAATG CCGGCACATT GAAAAAAGAA GAACACGAAT ATTTTGCAGG GGCAGGCATC
AACAGCGTTT ACAACGCCAC AGCACATAGC GCTTATGATC TGGCGAAACA GGCAGCAGTA
AAGGTCCTGG ACCAATCCGG CGTACCTGCA GCTGATATCG GTCTGATTGT CTATATACAT
AGCCGCTTAC CTGAGTACCT GGTGAGTTCA CAGGCAGGTC GCCTGCAACA TGACCTCCAG
GCACGCAACG CCGTCTTCTT TTCCTTGTCA GACCTCGGTT GCGCTGACAT CTCTATGGCG
CTGCAACTCG CCCAGGTATA TATGCAGGGC AATACCCAGA TCAAACATGC ATTGATCTGC
TACGGTAACA AACCGTATGC GCCCAGTCGA TTCAGATATC CGGTGACGAT CAATGGTGAC
GCAGGCATCG CCCTGCTCTT GTCCCGTACT GAAAAGAACA GGATCCTGGA TATAAAAATC
AAGACCAATG GTCGCTACTG GAATCTCTTC AAAGTAGATT ATAAAGACAA AAGTTTTGCG
GAGTTCAGGG AAGAATGCGC CAGTATAAGA TCTTATGCAT TCGAACTGGC ACTTGAAAGC
AGAAATGAAT TTGTTAAACT CAATAATGAC CTGCTGGAAA CAAACGGACT GGCGAAACCA
GATGTCAGCC ACTTCATGAT GCAGAATCTC TCTATGCGGG CATTCGCCTA TTATGAAGAA
GCATTGGGCA TCCGTATTTC AGACGTCTGC AGAGAAAACC TGACAGAGCT GGGACATCTG
GGTCCCGGTG ATATTATCTG CAATTATGCA AGAGCACTGG AGCAGGACCT GGTGCGTCCG
GGGGAACATG TGTTGCTGAT GAATAATAGT CCTGTGGCCG TATGGAGTTC AATTTTACTT
AAAGCCTGA
|
|---|
| Protein sequence | MIGINQIATV IIGDKTPVSS LLNAGTLKKE EHEYFAGAGI NSVYNATAHS AYDLAKQAAV
KVLDQSGVPA ADIGLIVYIH SRLPEYLVSS QAGRLQHDLQ ARNAVFFSLS DLGCADISMA
LQLAQVYMQG NTQIKHALIC YGNKPYAPSR FRYPVTINGD AGIALLLSRT EKNRILDIKI
KTNGRYWNLF KVDYKDKSFA EFREECASIR SYAFELALES RNEFVKLNND LLETNGLAKP
DVSHFMMQNL SMRAFAYYEE ALGIRISDVC RENLTELGHL GPGDIICNYA RALEQDLVRP
GEHVLLMNNS PVAVWSSILL KA
|
|---|
| |