| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3340 |
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| Symbol | |
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| ID | 8359506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4108733 |
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| End bp | 4109848 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644965513 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003123008 |
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| Protein GI | 256422355 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0315517 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAACGT CCAGGAACAT ATATATATTA GCTATCAGCG CTGCCCTTGG TGGTTGTATC
ACTAAAGGTG AGAACGTGAA CAATGAATCA ACATTAAATA CCTACCCGGT CCTACAACTG
TCACTCTGTG ATACCGTTCT TCACAAAAAT TACGTGGCAG ATATCGAAGC CGTACGTAAT
GTGGAAATAC GTGCCCGTGT TAACGGCTTC CTGAACAAGA TTTATGTGGA CGAAGGGCAA
CATGTTCAAC AGGGGCAGTT GCTCTTCTCC CTCAACGATG AGGAATATCG CTCCGAACTG
GCAAAAGCCA AAGCAGCACT CAGCAGCGCC ATCGCAGAAG CAAAAGGCGC ACAGCTTGAA
GTAGATCGTG TGCAGCTGCT GGTCGAGAAA AAGGTCATCG CTAAAAGTGA ACTGGAAGTA
GCCAAAGCAA GACTGGCTGC TGGCAATGCC CGCATCGATG AAGCCCGTTC CTCTGAAGCC
AATGCAGCCA CAAGATTGTC CTATACTGTT ATCCGCGCTC CTTTTGACGG ATATATAGAC
AGGATCCCAT CAAAATCCGG TAGCCTGATC GGAGAAGGTG AACTACTGAC CTCCGTTTCT
GATATCAAAG AAGTATACGC TTATTTCAAT GTTTCTGAAA CAGAATACCT GCAACACAGT
CGTGCGAACA AAGGAAAAGA ACATCCTATA GTACACCTCG TACTGGCAGA CGGTAGTGAT
TATCCCTACA CCGGTAAGGT AGAAACAATT GAAAGCGAAT TCGAAGAAAC AACCGGCTCC
ATCGCTTTCA GAGCCAGATT CCCCAACCCA CAGTACTTAC TGAAACACGG CGCCAGCGGA
AAGGTACAGC TGAGCAATGC TATGAGCGAT GCCATGCTCC TGCCGCAAAA AGCCGTATTT
GAAATGCAGG ACAAAAACTA TGTATTCATC CTGGATAAAT CTAACCAGGT AAAAATGAAA
AACTTCGTAC CAGGCGCACG ACTGGCCAAC TGTTACATCG TACAGTCAGG TCTCAATGCA
GGCGACAAAG TTGTCTACGA AGGCGTACGC AACCTGCGCG ATGGTATGAA GATCAATCCT
GCTGCCATCA CACTCGACAG CATTAAAGCA CTGTAA
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| Protein sequence | MRTSRNIYIL AISAALGGCI TKGENVNNES TLNTYPVLQL SLCDTVLHKN YVADIEAVRN
VEIRARVNGF LNKIYVDEGQ HVQQGQLLFS LNDEEYRSEL AKAKAALSSA IAEAKGAQLE
VDRVQLLVEK KVIAKSELEV AKARLAAGNA RIDEARSSEA NAATRLSYTV IRAPFDGYID
RIPSKSGSLI GEGELLTSVS DIKEVYAYFN VSETEYLQHS RANKGKEHPI VHLVLADGSD
YPYTGKVETI ESEFEETTGS IAFRARFPNP QYLLKHGASG KVQLSNAMSD AMLLPQKAVF
EMQDKNYVFI LDKSNQVKMK NFVPGARLAN CYIVQSGLNA GDKVVYEGVR NLRDGMKINP
AAITLDSIKA L
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