| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3286 |
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| Symbol | |
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| ID | 8359452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 4046443 |
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| End bp | 4047015 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644965459 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003122954 |
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| Protein GI | 256422301 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.561294 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.00143892 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATGAGC AGTGGACAGA CAGACAACGG TATGAACAAT TGTTCAGGGA CCATTATCAA
CCATTATGCC TTTTTGCTTA TAGCTACCTG AAAGATATGG AAGCTGCAAA AGATGTAGTG
CAGGACTTCT TTTTCCGTTG CTGGGGTAAA CGAGATACCC TGCCCACACC AGATAGTTTC
GAGAAATATG CCTTCCGTGC CATCCGTAAT GGCGTCATCA ACTACCAGAA CAGCGCCGCC
ACCCGCACGA AACACAATGT ACAATCCGCA GCCCCTGATA CCTATGATCC GCAGCGGGAA
GAAGCTATTC TGCAGAAAGA GGATCAGCTA AAAGCGGCAT TGCTGCTGGC CGTGCAACGT
TTACCGGAAC AGCGCCGTAG GATATTTCTC CTCAGCAATG GAGATGGTTA TAAGTACAGC
GAAATTGCCG AAAAACTTAA TATTTCCCTG AATACCGTGA AGACCCAGCT TCGTAAAGCC
TATGAGACGC TCAGACAGGA GCGTGAAAGG CTGGAAAAGC TGCTTATCTA CCTGGTAATC
TTCAAGATGC TCTATACAGC GCTATTTTTT TAA
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| Protein sequence | MHEQWTDRQR YEQLFRDHYQ PLCLFAYSYL KDMEAAKDVV QDFFFRCWGK RDTLPTPDSF
EKYAFRAIRN GVINYQNSAA TRTKHNVQSA APDTYDPQRE EAILQKEDQL KAALLLAVQR
LPEQRRRIFL LSNGDGYKYS EIAEKLNISL NTVKTQLRKA YETLRQERER LEKLLIYLVI
FKMLYTALFF
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