| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3023 |
|---|
| Symbol | |
|---|
| ID | 8359187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 3742885 |
|---|
| End bp | 3743580 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644965203 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_003122700 |
|---|
| Protein GI | 256422047 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.957442 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTT TCATAAAAGA AAATACCAGA TCAATTTTTA TAACACTGTT GCTATCCTTC
ACAACAGCTA CGGTAGCTAA TGCACAACGT GTATCCAGGG ATTCATCAAT GATGATGGAC
AAAATGGAGC CGCAACAGAT GTCTTACACC ATTCCACAAA AACCGGAAGA TATCAGTCCA
TTACTAAACG GGGAAAAGAT TCCAAAAGCG ATATTGACCG ATTTATCCGG AAAAAAATTC
GACCTCAATA AAGCAGTGTC GGAAAAACCG ACCGTGCTGG TGTTCTACCG GGGAGGCTGG
TGTCCCTATT GCTCCAGACA ACTTTCCGGC TTGCAACAAG CGGCCCCCGA TCTCGAAAAG
TTGGGATATC AGTTAATCGC AATAAGCACT GACACTCCGG AAGAACTTAT GCAATCTGCA
ACAAAAGAAA AACTGGACTA TACATTGCTT TCCGACGCCG ATCTATCCCT ATCAAAACAA
TTTGGGATCG CCTACAAAGC ACCCGAAGCA TATTGGAACA TGTTGCCTAA AACAACTGGT
GGCCTGGATA CAGCGTTGCT ACTACCCGTA CCATCAGTTT TTATATTAGA CAAAAAAGGA
ACCATCCATT TCGAATATAT CAACCCTGAC TTTAAACAAA GATTAAGTGC TGATCTATTA
AAAGCTGTCA CCAATAGCAT CAGGAAGGAT CTCTAA
|
|---|
| Protein sequence | MKSFIKENTR SIFITLLLSF TTATVANAQR VSRDSSMMMD KMEPQQMSYT IPQKPEDISP
LLNGEKIPKA ILTDLSGKKF DLNKAVSEKP TVLVFYRGGW CPYCSRQLSG LQQAAPDLEK
LGYQLIAIST DTPEELMQSA TKEKLDYTLL SDADLSLSKQ FGIAYKAPEA YWNMLPKTTG
GLDTALLLPV PSVFILDKKG TIHFEYINPD FKQRLSADLL KAVTNSIRKD L
|
|---|
| |