| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3006 |
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| Symbol | |
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| ID | 8359170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3715534 |
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| End bp | 3719325 |
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| Gene Length | 3792 bp |
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| Protein Length | 1263 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644965186 |
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| Product | YD repeat protein |
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| Protein accession | YP_003122683 |
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| Protein GI | 256422030 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTA CTATTTTCAG AAAGGTCATG GTCATGACTT TCCTGTTACT ATCCGCTGTT
TGCGGTCTGG CACAGGACAA TATTTATGAC CGCACTACCA TTTCCTCCCC TACACCTGCA
AGTCTGGGAA AATATGTGGA TTTCCCAGTC AATACACATA CGGGTATTCC GGAAATCAGC
ATACCAATTT ACACCATCGA AACCGGCAAT CTCAAATTGC CAATTACATT AGGGAATCAT
CCTTCCGGGC TTAAAGTACT TGAACCAAGT AGTGCAGCAG GACTAGGCTT CGCGCTAAAT
GCTGGCGGCG TTATTACTCG AACAGTTCGC GGCGCTCCTG ACGAAAGGAG TACCAGTACT
ATCTACAACC AGGATCATGG ATGGTATTCA GACACAGGTT ACATGCGTCG CTTCTACAGC
AACCTAATGC AAGACTGGCA GGGTGTTGCC GCTGGTCGGC ATGATGGAGA ACCAGATTTG
TATACATTTA ACTTTGCAGG CTACGTCGGA AAATTCTTTT TCTCTGATGA TCGCAAGCCG
GTGATCCTTG CAGACGGAAA GAACCTAGAT ATTGAAATCC GTTGTACTTA TCTAGGAGGG
AATAGTATCG GAACCTTCGT ACTGATTACT CCTGATGGTA CTCGTTATAA CTTCGGCGGT
ATATTGTTAA GTCCTGATAA TGCAGAAGTT ACTAGCCCTT TTACTGTTGC TACAGGTTTT
CAAGAGGGGA AAGTGATTTC TACCTGGTAT CTGACGCAAA TTGTCAGTAC TGATTTGGCT
CAGACCATAA CATTTACTTA TGCTTCTGAG AACTATAGCT TTCATAGCAT CACATCCGCA
CCAATAAGCA GCCTAGATAA TACCAATTCA TATGACGCAA ATCTGATCAA GAACTTCGTC
AAAGGGAAAC GGCTTACTCG TATAGATTGG AAAACCGGAT CTGTACTGAT TAATTATGGT
GCAGCACGTA CAGATTTAGG TGGATATAAC ACGAAGGAAT TAGGAGATTC TGAAGTCAAT
TCAGAGGCGC GTCCCATTAG TTCTATTGAT ATCACCAATA ATCACAGCTT CTGTAAGCGG
TTTAATTTCT ATACTAGTTA TTTCCAGGAC AATACTACAG CTTTACCTAC TCAACTAGGT
AGCCTGACAA TCAATACAGA CCGGAAACGT CTTCGCCTTG ATAGTATAAA GGAAATGTCT
TGTACCGGCC AGCTTTCGCA ACCGGCCATC AAGTTTGAAT ATTTTACAGA GTTCGTTCCC
CGTAGGCTTA CCTTCGCCCA AGACTATTGG GGTTTCTATA ATGGACAAAC AGGTAATGCG
AAGCTGACAC CTACTATCAC CGAAACAGGT ACTACTACTG TAATATCAGG CGCTAATAGA
GCGCCGAGCT GGCCGCAAAT GCGGGCTGGT ACTTTAAAGC GGATTTATTG GCCGACAGGC
GGTAATACAG AATATCAATT TGAACCGCAT TTCGTCACTA CATCAATTGG CACACCACAA
TATGTAAACA GGAAAAATCT GGCAATAGGC TATGACGGCA GCAATCCTGA AGTTAAAACA
GACACAGTTA CGCTAGTCGG TGGCTCTTAT AAAATAACAT TATTGAATAC TACCGGGGGG
AGTGATGCTC ATTTTTCGCT AAAAAACAAC ACTACAGGCG ACTACTATAT CAGTATCTCG
ACGAACACTG ATACGAAGCT GACAGACTCC ATAATTCGTA CGCTGCCAGA CGGAGTATAT
ACTATGACCA TTATCAAGAA TACTTTTGAA AATGGCTCTA CTTCTGGGAA CGGTGCAACC
GGTATTATTG ATAGATATAC TGGCTCTAGC GGCCCTACAG ATGTGATTGT TGGTGGCTTA
CGCATCAAAA ATATACTCGC ATACGACCAT CTTTCTGGTA CAACGAATGC TACACAATAT
GATTATAATC AAAATGGCCG CAGCAGTGGA ATACTTTACA GCCGTCCTGT TTATGCAGCG
CTGATACGTA ATGATCTGGT GGCGCAATTA GGAGACTGGT CGCCATCCGG CTTTCAGCAA
GCTTGCAGTC CACAAGGATG TATTGCCTGT GTAGGTTTCC CCTATTTTCG CTCCGCCAAT
AGCATACAAC CAATGAGTAC CAGTCAAGGT GAACATATCG GTTATGAGGA AGTAAGCGTA
GGTAAACCCG ACAATGGATA TTCCGTATAT CGCTATTATA CAGGAATGCC AATTGGATAT
GTAACACCTT CTCTTGCAGT AACAAGCGTA GACCGTAGTA CCTGCTCTTA TTCGGTGCCT
AATTTTCCTT ATGCTCCCGA CGAATACAAT AACCTACGAG GCAAACTAAA AGAGGAAATG
CATTTCCGTA GCGATGGAAA GATCCTAAAA GATGTATTGT ATACTCATCA TTACGATACT
CCTACTGACA GTACTCGATG TTTTATGGCT GCTGCACTTT CAGGCACTTA CTTAGGTACT
TTCTACTGGC TCACGAGTAG CCGGAAATAT AGGGAAGTGA TATATACGAC AATGTATGCT
GAGGACGGTC CAGATTTTTT GACCAATACG CAAACAGTTT ATTATGGCAG TAAGTATCAC
AATGCGCCCA CTAAAGAAGT CTATTTCGAC TCCAAAGGAG ATTCAATAGT CACGACAAAT
AAATATGTCA AAGATTATGA ACCTAATTGT GGTTACGTTC TCACTTGCAG TAATAATTAT
CGCAATGTCT GCAATTCTTG TCAAGCTACC TACACAGCTG CGCAGAATGC TTGCGCTGGT
CAGGGAGGTG CTTGTTATAC AAATGCATTT TTGGCCTATC AGAAATGTAT GGACAATGCC
CGCATTACAT ACTCTGACTG CAGACTGCAA AAAGAGCTGG GATTTACTGA CTATTATTGG
TGCCGTCGTG GTTACAGAAG CACAGCCGAT TCCAACTTGG CTGCTATATA CAGCATGGCA
TTAGACAATA ACAATGAACG TGTAGAACAG TCTACATTTA AGGCGGGACT GCTCGTTGAT
GCCAAGATCA ATCTCCATAA GCGAATGAAT GACTCCTTCA GGGTAAGTCC GAATCAATTG
CAGACACTAC CGATAGCGGC TCCAAGTAAT AGCTTTAGCC CATCAGGCAT TAGTGGTAAT
AATCTATCCA AAGATTCCAG GTACATGCGC GAAGCGTCTG TGTTATTTGA CAGCGGAGTA
GTCCATCAGC TTAGTTCGGA CTACAATCCT CCGATAAGCA CCATATGGGA TTATCGTTTC
AGTTACAGAA CAGCAGTGGC GACTAATACA ACAATAGATC AGATTGCTTA TACTTCTTTT
GAAGCAGACA ATAGAGGTGG CTGGATTTAC GAGGACAACT CTATAGCTGA TACCAATGCG
ATGACTGGGA AGGTAGTTCA TCGTCCACTC ACTGGTATTT ACAAATCCGG ACTGGATATA
AACCGGACAT ACATTCTCAG TTACTGGACA GATAAGACTA CTCCATTCAC CATAGCGGGA
ACTATTGCGT ACATACATGG AACTGCTAAT GTAAACGGCT GGAGGTACTT TGAGCACAAG
ATTAGTGGGG TAACAGTAAT CAATCTTACC GGAAACTTCA AAATAGATGA ATTGAAGTTG
TATCCAGAAG GTGCTCAGAT GGTGACTTAC ACTTATGAGC CAATGGTAGG AATGACTAGT
GTAAGCAGTG CAGGCGATCA AATCATCAGA TATAGCTACG ATGCTCTAGG TCGTCTGATC
GCAGTAAGTG ATAGGGAGCG AAAACTAATG AAAGTCTACG ATTATCAATT CCAAGTTCCA
ACCCTTCAAT AA
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| Protein sequence | MKRTIFRKVM VMTFLLLSAV CGLAQDNIYD RTTISSPTPA SLGKYVDFPV NTHTGIPEIS
IPIYTIETGN LKLPITLGNH PSGLKVLEPS SAAGLGFALN AGGVITRTVR GAPDERSTST
IYNQDHGWYS DTGYMRRFYS NLMQDWQGVA AGRHDGEPDL YTFNFAGYVG KFFFSDDRKP
VILADGKNLD IEIRCTYLGG NSIGTFVLIT PDGTRYNFGG ILLSPDNAEV TSPFTVATGF
QEGKVISTWY LTQIVSTDLA QTITFTYASE NYSFHSITSA PISSLDNTNS YDANLIKNFV
KGKRLTRIDW KTGSVLINYG AARTDLGGYN TKELGDSEVN SEARPISSID ITNNHSFCKR
FNFYTSYFQD NTTALPTQLG SLTINTDRKR LRLDSIKEMS CTGQLSQPAI KFEYFTEFVP
RRLTFAQDYW GFYNGQTGNA KLTPTITETG TTTVISGANR APSWPQMRAG TLKRIYWPTG
GNTEYQFEPH FVTTSIGTPQ YVNRKNLAIG YDGSNPEVKT DTVTLVGGSY KITLLNTTGG
SDAHFSLKNN TTGDYYISIS TNTDTKLTDS IIRTLPDGVY TMTIIKNTFE NGSTSGNGAT
GIIDRYTGSS GPTDVIVGGL RIKNILAYDH LSGTTNATQY DYNQNGRSSG ILYSRPVYAA
LIRNDLVAQL GDWSPSGFQQ ACSPQGCIAC VGFPYFRSAN SIQPMSTSQG EHIGYEEVSV
GKPDNGYSVY RYYTGMPIGY VTPSLAVTSV DRSTCSYSVP NFPYAPDEYN NLRGKLKEEM
HFRSDGKILK DVLYTHHYDT PTDSTRCFMA AALSGTYLGT FYWLTSSRKY REVIYTTMYA
EDGPDFLTNT QTVYYGSKYH NAPTKEVYFD SKGDSIVTTN KYVKDYEPNC GYVLTCSNNY
RNVCNSCQAT YTAAQNACAG QGGACYTNAF LAYQKCMDNA RITYSDCRLQ KELGFTDYYW
CRRGYRSTAD SNLAAIYSMA LDNNNERVEQ STFKAGLLVD AKINLHKRMN DSFRVSPNQL
QTLPIAAPSN SFSPSGISGN NLSKDSRYMR EASVLFDSGV VHQLSSDYNP PISTIWDYRF
SYRTAVATNT TIDQIAYTSF EADNRGGWIY EDNSIADTNA MTGKVVHRPL TGIYKSGLDI
NRTYILSYWT DKTTPFTIAG TIAYIHGTAN VNGWRYFEHK ISGVTVINLT GNFKIDELKL
YPEGAQMVTY TYEPMVGMTS VSSAGDQIIR YSYDALGRLI AVSDRERKLM KVYDYQFQVP
TLQ
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